Running Jemboss on a Mac.
I have a folder of GCG sequences, one of which I have included.
When I open these files in textedit, they are complete.
However when double clicked in the file manager, they look like fasta files
with no sequence information. Likewise when input to a program like needle.
It doesn't seem to matter what is done with Input Sequence Options.
What's Up, Doc?
Nick Staffa
Telephone: 919-316-4569 (NIEHS: 6-4569)
Scientific Computing Support Group
NIEHS Information Technology Support Services Contract
(Science Task Monitor: Roy W. Reter ([EMAIL PROTECTED])
National Institute of Environmental Health Sciences
National Institutes of Health
Research Triangle Park, North Carolina
!!NA_SEQUENCE 1.0
LOCUS HSPGK2G 1911 bp DNA PRI 12-SEP-1993
DEFINITION Human testis-specific PGK-2 gene for phosphoglycerate kinase
(ATP:3-phospho-D-glycerate 1-phosphotransferase, EC 2.7.2.3).
ACCESSION X05246 Y00261
NID g35437
KEYWORDS phosphoglycerate kinase.
SOURCE human.
ORGANISM Homo sapiens
Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata;
Vertebrata; Eutheria; Primates; Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1911)
AUTHORS McCarrey,J.R. and Thomas,K.
TITLE Human testis-specific PGK gene lacks introns and possesses
characteristics of a processed gene
JOURNAL Nature 326 (6112), 501-505 (1987)
MEDLINE 87173013
FEATURES Location/Qualifiers
source 1. .1911
/organism="Homo sapiens"
/db_xref="taxon:9606"
CDS 71. .1324
/note="PGK (AA 1-417)"
/codon_start=1
/db_xref="PID:g35438"
/db_xref="SWISS-PROT:P07205"
/translation="MSLSKKLTLDKLDVRGKRVIMRVDFNVPMKKNQITNNQRIKASI
PSIKYCLDNGAKAVVLMSHLGRPDGVPMPDKYSLAPVAVELKSLLGKDVLFLKDCVGA
EVEKACANPAPGSVILLENLRFHVEEEGKGQDPSGKKIKAEPDKIEAFRASLSKLGDV
YVNDAFGTAHRAHSSMVGVNLPHKASGFLMKKELDYFAKALENPVRPFLAILGGAKVA
DKIQLIKNMLDKVNEMIIGGGMAYTFLKVLNNMEIGASLFDEEGAKIVKDIMAKAQKN
GVRITFPVDFVTGDKFDENAQVGKATVASGISPGWMGLDCGPESNKNHAQVVAQARLI
VWNGPLGVFEWDAFAKGTKALMDEIVKATSKGCITVIGGGDTATCCAKWNTEDKVSHV
STGRGASLELLEGKILPGVEALSNM"
misc_feature 135. .136
/note="position of intron I in PGK-1"
misc_feature 186. .187
/note="position of intron II in PGK-1"
misc_feature 342. .343
/note="position of intron III in PGK-1"
misc_feature 487. .488
/note="position of intron IV in PGK-1"
misc_feature 591. .592
/note="position of intron V in PGK-1"
misc_feature 711. .712
/note="position of intrion VI in PGK-1"
misc_feature 826. .827
/note="position of intron VII in PGK-1"
misc_feature 1006. .1007
/note="position of intron VIII in PGK-1"
misc_feature 1184. .1185
/note="position of intron IX in PGK-1"
misc_feature 1224. .1888
/note="polyA rich sequence"
misc_feature 1283. .1284
/note="position of intron X in PGK-1"
misc_feature 1711. .1716
/note="polyA signal"
BASE COUNT 583 a 367 c 442 g 519 t
ORIGIN
HSPGK2G Length: 1911 August 24, 1998 10:56 Type: N Check: 4156 ..
1 GCCCCTCAAC AGCAAGTTGG TTCTTCAGCA TTAAGATCCA GGTGTCAGCC
51 TATGTCTTTA TATTGTCAAG ATGTCTCTTT CTAAGAAGTT GACTTTAGAC
101 AAACTGGATG TTAGAGGGAA GCGAGTCATC ATGAGAGTAG ACTTCAATGT
151 TCCCATGAAG AAGAACCAGA TTACAAACAA CCAGAGGATC AAGGCTTCCA
201 TCCCAAGCAT CAAGTACTGC CTGGACAATG GAGCCAAGGC AGTAGTTCTT
251 ATGAGTCATC TAGGTCGGCC TGATGGTGTT CCCATGCCTG ACAAATATTC
301 CTTAGCACCT GTTGCTGTTG AGCTCAAATC CTTGCTGGGC AAGGATGTTC
351 TGTTCCTGAA GGACTGTGTA GGCGCAGAAG TGGAGAAAGC CTGTGCCAAC
401 CCAGCTCCTG GTTCAGTCAT CCTGCTGGAG AACCTGCGCT TTCATGTGGA
451 GGAAGAAGGG AAGGGCCAAG ATCCCTCTGG AAAGAAGATT AAAGCTGAGC
501 CAGATAAAAT AGAAGCCTTC CGAGCATCAC TTTCCAAGCT AGGGGACGTC
551 TATGTCAATG ATGCTTTTGG CACTGCACAC CGCGCTCATA GTTCCATGGT
601 GGGAGTGAAT CTGCCCCATA AAGCATCCGG ATTCTTGATG AAGAAGGAAC
651 TAGATTACTT TGCTAAAGCC TTGGAAAACC CAGTGAGACC CTTTCTGGCT
701 ATACTTGGTG GAGCCAAAGT GGCAGACAAG ATCCAACTTA TCAAAAATAT
751 GCTGGACAAA GTCAATGAGA TGATTATTGG TGGTGGAATG GCTTATACCT
801 TCCTTAAGGT ACTCAACAAC ATGGAGATTG GTGCTTCCCT GTTTGATGAA
851 GAGGGAGCCA AGATCGTTAA AGATATCATG GCCAAAGCAC AAAAGAATGG
901 TGTAAGGATT ACTTTTCCTG TTGATTTTGT TACTGGGGAC AAGTTTGACG
951 AGAACGCTCA GGTTGGAAAA GCCACTGTAG CATCTGGCAT ATCTCCTGGC
1001 TGGATGGGTT TGGACTGTGG TCCTGAGAGC AACAAGAATC ATGCTCAAGT
1051 TGTGGCTCAA GCAAGGCTAA TTGTTTGGAA TGGGCCGTTA GGAGTATTTG
1101 AATGGGATGC CTTTGCTAAG GGAACCAAAG CCCTCATGGA TGAAATTGTG
1151 AAAGCCACTT CCAAGGGCTG CATCACTGTT ATAGGGGGTG GAGACACTGC
1201 TACTTGCTGT GCCAAATGGA ACACTGAAGA TAAAGTCAGC CATGTCAGCA
1251 CTGGACGCGG TGCCAGTCTA GAGCTTCTGG AAGGTAAAAT CCTTCCTGGA
1301 GTAGAGGCCC TCAGCAACAT GTAGTTAATA TAGTGTTACT TCCTTCTGTT
1351 TTCTGTCCAT GGCCCTTAAG TCAGCTTAAT GCTTTTACAT CTCGATGTGA
1401 CTTTTGTTAA AATCTACTCC TAGATCAAGA CCTATGTAAT GGACAAGCAG
1451 CAGGCCATCA GGAACTCTTA ATATCAGCAC AGCAATTCAT TTTAGTTTGG
1501 TCACGCATTT GCCTGTTCAA GTTCTCATTT GAACTTCACC ATTGTGCTAT
1551 CTAGGGAGGA CATATTCTTA AGTTGCCTAT TAAAGAAAGT GAGCTGAAGA
1601 AACTGAATCT TTTTATTTTA GTCCAACTTT GCTATTGTTT CATAATTTGA
1651 AACCCAAAAG ATAAAACTTA ATTTGTTGGG AAAGGGTGGA ATGAAAGTTG
1701 ACAAACAAAC AATAAATATG CCCAAATAAA CTGAGAAAAA TAATTACATA
1751 TAAAGAACTC ATGGGTACCA TTAAAGTTCT GCTAAGGGGA AATGTTATAC
1801 TAAATAGGAC CAAAAAAAAG AGAAATGAAA GACACTTATT AAACCAAGGA
1851 ATTTTTAAAA AGAAAAGAAA TTAAACTCAA GGTAAGAATT ATGTTTGTGT
1901 GCATTATCAA T
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