> -----Original Message----- > From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] > bio.org] On Behalf Of Marc Logghe > Sent: Wednesday, May 14, 2008 10:14 AM > To: [EMAIL PROTECTED] > Subject: [EMBOSS] transeq feature/bug > > Hi all, > > A Pise user reported the following issue when running transeq: the > resulting translation is dependant on the order of the input sequences. > > As it seems, transeq takes the length of the first sequence and uses > that range to translate. Which is fine, but that range is used as well > for all the sequences that are coming after, which is wrong. > > If it happens that your first sequence in the list is smaller than the > ones coming after, then all translations are truncated. > > I think that is a bug. > Update. It is not a bug. The issue was an old transeq.acd file hanging around with ' default: "$(sequence.begin)-$(sequence.end)"' for the regions parameter. Sorry for the fuzz and thanks Peter for looking into this. Regards, Marc
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