Our emma from Jemboss was returning the input sequences in a fasta file without aligning them. >From command line we discovered that we had no clustalw!
SysAdmin obtained clustalw2 and made a symbolic link set to 'clustalw' Running clustalw goes OK and generates this identification: ******** CLUSTAL 2.0.7 Multiple Sequence Alignments ******** Command line emma in conjunction with this program generates this error: rpmbuild.niehs.nih.gov> emma Multiple alignment program - interface to ClustalW program Input (gapped) sequence(s): Lemur_align.fasta output sequence set [lemur.aln]: Dendrogram (tree file) from clustalw output file [lemur.dnd]: CLUSTAL 2.0.7 Multiple Sequence Alignments Error: parameter required for /dnamatrix Error: Failed to open filename '00003189B' Problem writing out EMBOSS alignment fileSegmentation fault rpmbuild.niehs.nih.gov> Y¹d think the defaults would be sufficient. Y¹d think that Jemboss would do a better job of reporting problems. Nick Staffa Telephone: 919-316-4569 (NIEHS: 6-4569) Scientific Computing Support Group NIEHS Information Technology Support Services Contract (Science Task Monitor: Roy W. Reter ([EMAIL PROTECTED]) National Institute of Environmental Health Sciences National Institutes of Health Research Triangle Park, North Carolina _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
