Giovanni Marco Dall'Olio wrote:
I thought this discussion was so interesting, that I have opened a section
in wikipedia to discuss all sequence alignment editor software, starting
from those that you have described here.
Nice initative !
A remark : the latest version of SeaView I have seen supports clustalw and
muscle for re-alignment, not t-coffee (although you can re-configure SeaView to
put any alignment software in).
Some other software that could be mentioned :
- Genedoc (very useful for preparing alignments for publication)
http://www.nrbsc.org/gfx/genedoc
- SeqPup
http://iubio.bio.indiana.edu/soft/molbio/seqpup/java/
- MSE (text-mode, also embossified version available as Embassy package)
Regards,
Guy Bottu,
BEN
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