I've been trying to make a nice image of an alignment using prettyplot, but have failed to find the right set of options to get what I want.
I need to get the whole alignment into one image (png), even if that ends up being very long and thin. At the moment it always seems to paginate. I also need to get rid of all the text on the plot (including the program name and the list of options etc.). I've tried all of the -gtitle -gsubtitle etc options, but there is some text I can't seem to shift. At a push I could get away with fixing either one of those two problems as I can then fix the other myself, but the combination of the two is making life difficult. Is there an option I'm missing or is this not possible with prettyplot? The nearest I got was: cat muscle.txt | prettyplot -graph png -nonumber -noname -consensus N -auto -sequences stdin -goutfile pretty.png -gdesc " " -gtitle " " -gsubtitle " " Cheers Simon. -- Simon Andrews PhD Bioinformatics Group The Babraham Institute [EMAIL PROTECTED] +44 (0) 1223 496463 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
