Hi, [EMAIL PROTECTED] schrieb am 22/09/2008 12:52:15:
> I've been trying to make a nice image of an alignment using prettyplot, > but have failed to find the right set of options to get what I want. > > I need to get the whole alignment into one image (png), even if that > ends up being very long and thin. At the moment it always seems to > paginate. experiment with the option -residuesperline. If you set this large enough, you can squeeze the alignment to one page or even one row. > > I also need to get rid of all the text on the plot (including the > program name and the list of options etc.). I've tried all of the > -gtitle -gsubtitle etc options, but there is some text I can't seem to > shift. with -nolist you can remove the run options which appear at the bottom of the plot. But I have no idea how to remove the gtitle and gsubtitle completely. > > At a push I could get away with fixing either one of those two problems > as I can then fix the other myself, but the combination of the two is > making life difficult. > > Is there an option I'm missing or is this not possible with prettyplot? > > The nearest I got was: > > cat muscle.txt | prettyplot -graph png -nonumber -noname -consensus N > -auto -sequences stdin -goutfile pretty.png -gdesc " " -gtitle " " > -gsubtitle " " > > Cheers > > Simon. > > -- > Simon Andrews PhD > Bioinformatics Group > The Babraham Institute > > [EMAIL PROTECTED] > +44 (0) 1223 496463 > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss Cheers, David. _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
