michael watson (IAH-C) wrote:
Confusing because this didn't happen before and I haven't changed
anything!
EMBOSS 5.0.0 on RHEL 4.
Why is infoseq complaining about a database? Has my environment changed
because this used to work exactly how I wanted it to!
Mick
-bash-3.00$ infoseq
Displays some simple information about sequences
Input (gapped) sequence(s): Contig0.1399.fasta
Died: Qualifier '-database' not found
Yes, your environment has changed. EMBOSS 5.0.0 does have a -database
qualifier, but the infoseq.acd file that was used does not have one.
The -database qualifier was new in 5.0.0 and controls whether the
database column appears in the output.
If you run infoseq with the command line option -debug it will write a
file infoseq.dbg that will include the full path the the infoseq.acd
file that it used.
If you need more help working out why the wrong file is used, please
send the infoseq.dbg file to [EMAIL PROTECTED] and we will
try to help.
regards,
Peter Rice
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