Hi, colourps and cps are synonymous so you should be able to use either. If you want to specify the output type from the command line you could type:
density -quad -qgraph=colourps inputsequence for a quad graph (qgraph, not ggraph in your email) or, for a dual graph density -dual -dgraph=cps inputsequence or am I misunderstanding your question? HTH Alan > Hi, > > According to the ACD file, the density application seems to use the > 'graph' qualifier. > > When used, I get this error message: > Unknown qualifier -graph=colourps > > > graph seems to have been replaced by ggraph and dgraph. > And colourps seems to be cps now. > > > How to fix it in the source ? > Thanks > > -- > Sébastien Moretti > SIB EMBnet, Quartier Sorge - Genopode > CH-1015 Lausanne, Switzerland > Tel.: +41 (21) 692 4056/4221 > http://ch.embnet.org/ http://myhits.vital-it.ch/ > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
