Aengus Stewart wrote:
After trimming a bunch of illumina reads I have sequences that are 12bp
long and "we" want to find their genomic location
Can you say that they should match exactly (depending on the size of
genome, and the accuracy of the reads)?
A word matching algorithm should work well.
How many reads do you have?
This is actually a problem we are very interested in writing EMBOSS
applications for.
regards,
Peter
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