Hi Mick, It looks, from the following:
> In file included from /usr/local/include/emboss.h:5, > > from ../include/phylip.h:30, > > from clique.c:1: > > /usr/local/include/ajgraph.h:29:20: plplot.h: No such file or directory that you may have an old installation of EMBOSS under /usr/local (or bits of an old installation) i.e. it is looking in /usr/local/include rather than /usr/local/EMBOSS/include. The gcc compiler will usually look under /usr/include and /usr/local/include automatically and preferentially, so anything there will tend to override anything in /usr/local/EMBOSS/include. It is also unusual to see "-I/usr/include//include" there (perhaps a rogue CFLAGS environment variable somewhere or some manual editing of the makefiles), but the definition is meaningless and harmless (unless someone has been installing software under /usr/include). plplot.h is provided as part of the EMBOSS distribution (usually in /fu/bar/emboss/include/eplplot) and contains definitions for the graphics system. HTH Alan > Hi > > > > I am running RHEL 4 and just installed EMBOSS 6.0.1 in /usr/local/EMBOSS > > > > I downloaded ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.67.tar.gz > and tried to install that. > > > > I used ./configure --prefix=/usr/local/EMBOSS and then tried make. The > results are below. > > > > Any help? What is plplot.h? > > > > Thanks > > Mick > > > > -bash-3.00# make > > Making all in src > > make[1]: Entering directory `/usr/bioinfvm/PHYLIPNEW-3.67/src' > > gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" > -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" > -DVERSION=\"3.67\" -DSTDC_HEADER > > S=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 > -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 > -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 > > -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 > -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 > -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_ > > FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 > -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. > -I../include -I/usr/local/EMBOSS/incl > > ude -I/usr/local/EMBOSS/include/eplplot -DAJ_LinuxLF > -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE > -DLENDIAN -I/usr/include//include -DNO_AUTH -O2 -MT > > clique.o -MD -MP -MF .deps/clique.Tpo -c -o clique.o clique.c > > In file included from /usr/local/include/emboss.h:5, > > from ../include/phylip.h:30, > > from clique.c:1: > > /usr/local/include/ajgraph.h:29:20: plplot.h: No such file or directory > > In file included from /usr/local/include/emboss.h:5, > > from ../include/phylip.h:30, > > from clique.c:1: > > /usr/local/include/ajgraph.h:81: error: syntax error before "xx0" > > /usr/local/include/ajgraph.h:82: error: syntax error before "xx0" > > /usr/local/include/ajgraph.h:84: error: syntax error before "xcentre" > > /usr/local/include/ajgraph.h:115: error: syntax error before "xx0" > > /usr/local/include/ajgraph.h:116: error: syntax error before "xx0" > > /usr/local/include/ajgraph.h:117: error: syntax error before '*' token > > /usr/local/include/ajgraph.h:135: error: syntax error before "PLFLT" > > /usr/local/include/ajgraph.h:146: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:147: error: syntax error before '*' token > > /usr/local/include/ajgraph.h:162: error: syntax error before "PLFLT" > > /usr/local/include/ajgraph.h:169: error: syntax error before "PLFLT" > > /usr/local/include/ajgraph.h:170: error: syntax error before "PLFLT" > > /usr/local/include/ajgraph.h:172: error: syntax error before "xx0" > > /usr/local/include/ajgraph.h:173: error: syntax error before "xx0" > > /usr/local/include/ajgraph.h:189: error: syntax error before "PLFLT" > > /usr/local/include/ajgraph.h:191: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:192: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:193: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:194: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:196: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:198: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:200: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:203: error: syntax error before "PLFLT" > > /usr/local/include/ajgraph.h:283: error: syntax error before "xcentre" > > /usr/local/include/ajgraph.h:285: error: syntax error before '*' token > > /usr/local/include/ajgraph.h:285: error: syntax error before "xcentre" > > /usr/local/include/ajgraph.h:287: error: syntax error before "xcentre" > > /usr/local/include/ajgraph.h:291: error: syntax error before "xcentre" > > /usr/local/include/ajgraph.h:294: error: syntax error before > "ajGraphTextLength" > > /usr/local/include/ajgraph.h:294: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:296: error: syntax error before > "ajGraphTextHeight" > > /usr/local/include/ajgraph.h:296: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:297: error: syntax error before > "ajGraphDistPts" > > /usr/local/include/ajgraph.h:297: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:298: error: syntax error before > "ajGraphFitTextOnLine" > > /usr/local/include/ajgraph.h:298: error: syntax error before "xx1" > > /usr/local/include/ajgraph.h:302: error: syntax error before "xcentre" > > make[1]: *** [clique.o] Error 1 > > make[1]: Leaving directory `/usr/bioinfvm/PHYLIPNEW-3.67/src' > > make: *** [all-recursive] Error 1 > > > > Head of Bioinformatics > Institute for Animal Health > Compton > Berks > RG20 7NN > 01635 578411 > > > > Please consider the environment and don't print this e-mail unless you > really need to. > > The information contained in this message may be confidential or legally > privileged and is intended solely for the addressee. 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