Hi
Running Emboss 6.01 with PHYLIPNEW installed (3.67) When I run fdnaml from the command line it always prompts for a philip tree, which is supposedly optional. I know from the docs I should be able to turn this off using -options but I can't find out what I can say to -options to make it stop. fdnaml -sequence=/tmp/18702.msf -outfile=stdout -outtreefile=/tmp/dummy.tree Estimates nucleotide phylogeny by maximum likelihood Phylip tree file (optional): fdnaml -sequence=/tmp/18702.msf -outfile=stdout -outtreefile=/tmp/dummy.tree -options=F Estimates nucleotide phylogeny by maximum likelihood Phylip tree file (optional): fdnaml -sequence=/tmp/18702.msf -outfile=stdout -outtreefile=/tmp/dummy.tree -options=0 Estimates nucleotide phylogeny by maximum likelihood Phylip tree file (optional): Please forgive me if I'm doing something silly.... Mick Head of Bioinformatics Institute for Animal Health Compton Berks RG20 7NN 01635 578411 Please consider the environment and don't print this e-mail unless you really need to. The information contained in this message may be confidential or legally privileged and is intended solely for the addressee. If you have received this message in error please delete it & notify the originator immediately. Unauthorised use, disclosure, copying or alteration of this message is forbidden & may be unlawful. The contents of this e-mail are the views of the sender and do not necessarily represent the views of the Institute. This email, and associated attachments, has been checked locally for viruses but we can accept no responsibility once it has left our systems. Communications on Institute computers are monitored to secure the effective operation of the systems and for other lawful purposes. The Institute for Animal Health is a company limited by guarantee, registered in England no. 559784. The Institute is also a registered charity, Charity Commissioners Reference No. 228824 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
