Dear Jerome, > I'm using emboss 5.0 version, and come out of some problem. > I've got a alignment of 15 dna sequence, generated by clustalw (emma). > > This file format seems to generate a issu with fneighbor, as it > complains about 0 rows found in place of 15: > > This problem disapeared if i format the distance file in one line for > each sequence. As i do all of this command as default, maybe i forgot a > option in the fdnadist ? This command is inside a flow of cemboss > commands, so it's complicated for me to edit by hand each distance file > to be "correct" for fneighbor..
There is a known problem with distance file formats. For EMBOSS 6.0.1 there is a patch available to correct the ajphylo.c source file. I am working through updating to phylip 3.68 and there are some new format issues with distance matrix files. They will be included in the July release. If you need a fix for EMBOSS 5.0 then we can try sending you a corrected 5.0 ajphylo.c source file. Hope this helps, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
