Andres Pinzon wrote: > Hi everyone, > The following line, should return a single fasta file with all the CDS > in a single sequence: > > extractfeat environmental:DP000238 -type CDS -join stdout > > Instead it is returning each of them as a separate entry. Am I doing > something wrong?
The -join option combines all exons for one CDS (so that it can be translated as a complete reading frame). It is not intended to join all CDSs into one. for environmental:DP000238 I get 10 CDSs with -join set and 52 (one per exon) without -join. Hope this helps, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
