That's perfect, thank you. On Mon, Jun 22, 2009 at 11:44 AM, Peter Rice<[email protected]> wrote: > Andres Pinzon wrote:' >> Hi everyone, >> The following line, should return a single fasta file with all the CDS >> in a single sequence: >> >> extractfeat environmental:DP000238 -type CDS -join stdout >> >> Instead it is returning each of them as a separate entry. Am I doing >> something wrong? > > The -join option combines all exons for one CDS (so that it can be > translated as a complete reading frame). > > It is not intended to join all CDSs into one. > > for environmental:DP000238 I get 10 CDSs with -join set and 52 (one per > exon) without -join. > > Hope this helps, > > Peter > >
-- Andrés Pinzón http://bioinf.ibun.unal.edu.co/~apinzon/ Bioinformatics Center, Colombia EMBnet node http://bioinf.ibun.unal.edu.co Tel +57 3165000 ext 16961 Fax +571 3165415 Micology and Phytopathology Laboratory - Los Andes University. http://bioinf.uniandes.edu.co Tel +571 3394949 ext. 2768 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
