Hello
I did this on a test server a few weeks ago and wrote a script and it worked. Now I come to the production server - well, I get some errors. Same OS, same tar balls. Very frustrating. Can anyone help? I have PHYLIPNEW-3.67 unpacked in EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67. In that directory, I run configure and then make I get a variety of errors, but this time it's: Making all in src make[1]: Entering directory `/home/bioinfvm/EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67/src' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus -I../../../plplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -O2 -D__amd64__ -MT clique.o -MD -MP -MF .deps/clique.Tpo -c -o clique.o clique.c mv -f .deps/clique.Tpo .deps/clique.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus -I../../../plplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -O2 -D__amd64__ -MT disc.o -MD -MP -MF .deps/disc.Tpo -c -o disc.o disc.c mv -f .deps/disc.Tpo .deps/disc.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus -I../../../plplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -O2 -D__amd64__ -MT phylip.o -MD -MP -MF .deps/phylip.Tpo -c -o phylip.o phylip.c mv -f .deps/phylip.Tpo .deps/phylip.Po /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -D__amd64__ -o fclique clique.o disc.o phylip.o ../../../nucleus/libnucleus.la ../../../ajax/libajax.la ../../../plplot/libeplplot.la -L/usr/lib64 -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm mkdir .libs gcc -O2 -D__amd64__ -o .libs/fclique clique.o disc.o phylip.o ../../../nucleus/.libs/libnucleus.so ../../../ajax/.libs/libajax.so ../../../plplot/.libs/libeplplot.so -L/usr/lib64 -lX11 -lXaw -lXt -lgd -lpng -lz -lm -Wl,--rpath -Wl,/usr/local/lib /usr/bin/ld: cannot find -lXaw collect2: ld returned 1 exit status make[1]: *** [fclique] Error 1 make[1]: Leaving directory `/home/bioinfvm/EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67/src' make: *** [all-recursive] Error 1 Any help would be appreciated. Thanks Mick Head of Bioinformatics Institute for Animal Health Compton Berks RG20 7NN 01635 578411 Please consider the environment and don't print this e-mail unless you really need to. The information contained in this message may be confidential or legally privileged and is intended solely for the addressee. If you have received this message in error please delete it & notify the originator immediately. Unauthorised use, disclosure, copying or alteration of this message is forbidden & may be unlawful. The contents of this e-mail are the views of the sender and do not necessarily represent the views of the Institute. This email, and associated attachments, has been checked locally for viruses but we can accept no responsibility once it has left our systems. Communications on Institute computers are monitored to secure the effective operation of the systems and for other lawful purposes. 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