Hi Guys Thanks for all the replies.
One last question: do I need the X11 development libraries in order for fdrawgram and fdrawtree to produce postscript files? Thanks Michael -----Original Message----- From: jason zhang [mailto:[email protected]] Sent: 06 July 2009 17:35 To: michael watson (IAH-C) Cc: [email protected] Subject: Re: [EMBOSS] Problems installing EMBASSY / PHYLIPNEW Hi, Michael I did this in my fedora server : yum install libXaw libXaw-compat libXaw-devel to resolve this. -jason michael watson (IAH-C) wrote: > Hello > > > > I did this on a test server a few weeks ago and wrote a script and it > worked. > > > > Now I come to the production server - well, I get some errors. Same OS, > same tar balls. Very frustrating. Can anyone help? > > > > I have PHYLIPNEW-3.67 unpacked in EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67. > In that directory, I run configure and then make > > > > I get a variety of errors, but this time it's: > > > > Making all in src > > make[1]: Entering directory > `/home/bioinfvm/EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67/src' > > gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" > -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" > -DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 > -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 > -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 > -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 > -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 > -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 > -DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus > -I../../../plplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 > -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -O2 > -D__amd64__ -MT clique.o -MD -MP -MF .deps/clique.Tpo -c -o clique.o > clique.c > > mv -f .deps/clique.Tpo .deps/clique.Po > > gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" > -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" > -DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 > -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 > -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 > -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 > -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 > -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 > -DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus > -I../../../plplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 > -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -O2 > -D__amd64__ -MT disc.o -MD -MP -MF .deps/disc.Tpo -c -o disc.o disc.c > > mv -f .deps/disc.Tpo .deps/disc.Po > > gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" > -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\" > -DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 > -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 > -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 > -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 > -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 > -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 > -DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus > -I../../../plplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 > -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -O2 > -D__amd64__ -MT phylip.o -MD -MP -MF .deps/phylip.Tpo -c -o phylip.o > phylip.c > > mv -f .deps/phylip.Tpo .deps/phylip.Po > > /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -D__amd64__ -o > fclique clique.o disc.o phylip.o ../../../nucleus/libnucleus.la > ../../../ajax/libajax.la ../../../plplot/libeplplot.la -L/usr/lib64 > -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm > > mkdir .libs > > gcc -O2 -D__amd64__ -o .libs/fclique clique.o disc.o phylip.o > ../../../nucleus/.libs/libnucleus.so ../../../ajax/.libs/libajax.so > ../../../plplot/.libs/libeplplot.so -L/usr/lib64 -lX11 -lXaw -lXt -lgd > -lpng -lz -lm -Wl,--rpath -Wl,/usr/local/lib > > /usr/bin/ld: cannot find -lXaw > > collect2: ld returned 1 exit status > > make[1]: *** [fclique] Error 1 > > make[1]: Leaving directory > `/home/bioinfvm/EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67/src' > > make: *** [all-recursive] Error 1 > > > > Any help would be appreciated. > > > > Thanks > > Mick > > > > Head of Bioinformatics > Institute for Animal Health > Compton > Berks > RG20 7NN > 01635 578411 > > > > Please consider the environment and don't print this e-mail unless you > really need to. > > The information contained in this message may be confidential or legally > privileged and is intended solely for the addressee. 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