Hi Frank,
Hi Stephen,
However, I kind of need it today:-). I guess I'll have to truncate
them
to something sensible for the time being...
If you need a tree *today*... :-) you could download our TOPALi
package (loads all formats of alignment)
I have already installed Topali and was waiting for the results to
run. I have Over 1600 sequences and I wasn't sure when it was going to
finish since I started it this morning (using the Quick NJ option on a
Mac Mini). I think we should install it on a more powerful machine;-).
However, after I got your email I checked the status and the job had
finished. Good timing...
It does basic NJ, but also model-selection, PhyML, RaxML and
MrBayes. RaxML is quite fast.
We internally rename species names when TOPALi submits jobs to the
above external programs, but put the names back when we show the
alignment and the tree.
Yes, all the labels are there in full. Thanks a lot.
Peter - I can send you some date offline if you wish.
Steve
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