Dear Zhou Xiang, > How can i trim only a substring of the adapter?
You can use the -mismatch parameter to increase the allowed number of mismatches. A higher percent mismatch allows less precise matching, but in this case the value needs to be set quite high (25). We are interested in any comments on removing 3' adapters from short reads. We expect that we can find improvements in the methods used by vectorstrip. Please send us any suggestions. regards, Peter Rice _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
