> I am using EMBOSS 6.1.0 and I wonder why the '-mismatch' qualifier of > fuzznuc is missing in the new EMBOSS version.
In latest EMBOSS releases the '-mismatch' option seems to be renamed as '-pmismatch' as it became one of the associated qualifiers of '-pattern' option. http://emboss.open-bio.org/wiki/Appdoc:Fuzznuc#Command_line_arguments > Is there an alternative for fuzznuc for searching short DNA motifs? Do you search your DNA motifs in one/few long sequence(s) or in several short sequences? Regards, Mahmut _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
