Peter wrote:
On Tue, Dec 15, 2009 at 12:14 PM, Steve Taylor
<[email protected]> wrote:
Hi,
I am trying to load a Genpept entry into MSE, EMBOSS Version 6.0.1 on
Fedora. Unfortunately it doesn't like the LOCUS line.
It loads, but warns:
Warning: bad Genbank LOCUS line 'LOCUS ACN78416 225 aa
linear BCT 21-MAR-2009'
Changing the aa to bp fixes it.
What command line did you use? If you specified format "genbank",
I think you should use format name "genpept" or "refseqp" instead:
http://emboss.sourceforge.net/docs/themes/SequenceFormats.html
I didn't specify any format. I assumed it would pick it up...
However, I still get the error if I use
mse -sformat1 genpept -sequence ACN78417.pep
Is this what you mean?
Steve
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