Hi Peter: You may want to check this URL about how to convert quality score:
http://maq.sourceforge.net/fastq.shtml Thanks, TU ======================================= On Tue, 30 Mar 2010, Peter Rice wrote: > On 30/03/2010 14:13, Peter Rice wrote: > > > Where do I look to find scores that we can use (and how do we convert > > those to phred quality scores)? > > Aha, found something. The field is called PCON (confidence values), with > values 0-255. > > There is a possibility that these could be phred scores, but I suspect they > are whatever the basecaller has decided to write there. > > http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf > > Peter R. > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
