I can't seem to replicate this at all with any of my available FTP
clients or browser-based FTP clients. It works for me from both Mac OS X
clients as well as a CentOS 5.4 based Linux system.
Is there an FTP client / OS combo that seems in particular not to work?
-Chris
Here is one example:
dag-static:~ dag$ ftp emboss.open-bio.org
Connected to emboss.open-bio.org.
220 (vsFTPd 2.0.1)
Name (emboss.open-bio.org:dag): anonymous
331 Please specify the password.
Password:
230 Login successful.
Remote system type is UNIX.
Using binary mode to transfer files.
ftp> dir
229 Entering Extended Passive Mode (|||54472|)
150 Here comes the directory listing.
drwxr-xr-x 8 14 50 4096 May 22 2006 pub
226 Directory send OK.
ftp> cd pub/EMBOSS
250 Directory successfully changed.
ftp> ls
229 Entering Extended Passive Mode (|||38343|)
150 Here comes the directory listing.
-rw-rw-r-- 1 501 503 389856 Jul 21 09:25 CBSTOOLS-1.0.0.tar.gz
-rw-rw-r-- 1 501 503 426218 Jul 21 09:25 DOMAINATRIX-0.1.0.tar.gz
-rw-rw-r-- 1 501 503 441025 Jul 21 09:25 DOMALIGN-0.1.0.tar.gz
-rw-rw-r-- 1 501 503 452787 Jul 21 09:25 DOMSEARCH-0.1.0.tar.gz
-rw-rw-r-- 1 501 503 23572243 Jul 19 13:41 EMBOSS-6.3.1.tar.gz
lrwxrwxrwx 1 501 503 19 Jul 19 13:42 EMBOSS-latest.tar.gz ->
EMBOSS-6.3.1.tar.gz
-rw-rw-r-- 1 501 503 373798 Jul 21 09:25 EMNU-1.05.tar.gz
-rw-rw-r-- 1 501 503 415096 Jul 21 09:25 ESIM4-1.0.0.tar.gz
-rw-rw-r-- 1 501 503 569581 Jul 21 09:25 HMMER-2.3.2.tar.gz
-rw-rw-r-- 1 501 503 350791 Jul 21 09:25 IPRSCAN-4.3.1.tar.gz
drwxrwsr-x 7 501 503 4096 Feb 01 2006 Jemboss
-rw-rw-r-- 1 501 503 513418 Jul 21 09:25 MEMENEW-4.0.0.tar.gz
-rw-rw-r-- 1 501 503 823636 Jul 21 09:25 MIRA-2.8.2.tar.gz
-rw-rw-r-- 1 501 503 435315 Jul 21 09:25 MSE-3.0.0.tar.gz
-rw-rw-r-- 1 501 503 328540 Jul 21 09:25 MYEMBOSS-6.3.0.tar.gz
-rw-rw-r-- 1 501 503 359488 Jul 21 09:25
MYEMBOSSDEMO-6.3.0.tar.gz
-rw-rw-r-- 1 501 503 1667760 Jul 21 09:25 PHYLIPNEW-3.69.tar.gz
-rw-rw-r-- 1 501 503 571008 Jul 21 09:25 SIGNATURE-0.1.0.tar.gz
-rw-rw-r-- 1 501 503 531604 Jul 21 09:25 STRUCTURE-0.1.0.tar.gz
-rw-rw-r-- 1 501 503 386287 Jul 21 09:25 TOPO-2.0.0.tar.gz
-rw-rw-r-- 1 501 503 652433 Jul 21 09:25 VIENNA-1.7.2.tar.gz
drwxrwsr-x 3 522 503 4096 Aug 21 2006 contrib
drwxrwsr-x 2 501 503 4096 Nov 11 2005 doc
drwxrwsr-x 3 501 503 4096 Jul 21 09:25 fixes
drwxrwsr-x 14 501 503 4096 Jul 19 13:39 old
drwxrwsr-x 2 501 503 4096 Jul 06 2005 tutorials
drwxrwsr-x 4 501 503 4096 Jul 19 13:36 windows
226 Directory send OK.
ftp>
Hamish McWilliam wrote:
Hi Chris,
I'm also seeing problems with the FTP site, but using Mirror rather
than Transmit, it looks like the server does not like options being
specified to the LIST command:
Scanning remote directory /pub/EMBOSS
---> CWD /pub/EMBOSS
250 Directory successfully changed.
---> TYPE A
200 Switching to ASCII mode.
---> PORT 172,21,22,1,171,245
200 PORT command successful. Consider using PASV.
---> PASV
227 Entering Passive Mode (208,94,50,58,104,178)
---> LIST -lat
timed out
Cannot get remote directory listing because: timed out
Cannot get remote directory details (/pub/EMBOSS)
disconnecting from emboss.open-bio.org
Trying it with a command line client I get the response to hang if I
try using any options to ls or dir, without options they are fine.
All the best,
Hamish
On 29 May 2010 03:44, Koen van der Drift<[email protected]> wrote:
Hi Chris,
Did you have a chance to look at this? Just tried again, and Transmit still
won't let me access the emboss ftp site.
Thanks,
- Koen.
On Apr 23, 2010, at 11:44 AM, Chris Dagdigian wrote:
In the last few months the open-bio.org servers switched datacenters, IP
addresses and firewall/IDS appliances. Lots of juicy things to look at and
debug.
Koen - if you have a chance can you send me the IP address that you are
using to connect from? I might be able to find some relevant log entries
with that info.
-Chris
Koen van der Drift wrote:
Just for the record, it used to work with Transmit, this is only from
the last few months.
- Koen.
On Thu, Apr 22, 2010 at 7:28 PM, Chris Dagdigian<[email protected]>
wrote:
Might be an issue with the Juniper Netscreen firewall/IDS security
appliance
that sits upstream of the EMBOSS FTP server. I'll take a look at the
security logs and alerts.
-Chris
Koen van der Drift wrote:
Hi,
For a while now I am unable to access the emboss ftp site using the OS
X
client Transmit. Loggin in works fine, but it chokes on the LIST
command. I have no problems accessing it from the command line. I have
added the output from Transmit below. I don't know if this is a
Transmit
or emboss issue, but just wanted to let you know.
Thanks,
- Koen.
Transmit 3.6.9 Session Transcript
LibNcFTP 3.2.1 (August 13, 2007) compiled for UNIX
Uname: Darwin|exile.local|9.8.0|Darwin Kernel Version 9.8.0: Wed Jul 15
16:57:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_PPC|Power Macintosh
220: (vsFTPd 2.0.1)
Connected to emboss.open-bio.org.
Cmd: USER anonymous
331: Please specify the password.
Cmd: PASS NcFTP@
230: Login successful.
Cmd: TYPE A
200: Switching to ASCII mode.
Logged in to emboss.open-bio.org as anonymous.
Cmd: SYST
215: UNIX Type: L8
Cmd: PWD
257: "/"
Cmd: CWD /pub/EMBOSS/fixes
250: Directory successfully changed.
Cmd: PWD
257: "/pub/EMBOSS/fixes"
Cmd: PASV
227: Entering Passive Mode (208,94,50,58,83,232)
Cmd: LIST -a
Could not read reply from control connection -- timed out. (SReadline
1)
220: (vsFTPd 2.0.1)
Connected to emboss.open-bio.org.
Cmd: USER anonymous
331: Please specify the password.
Cmd: PASS NcFTP@
230: Login successful.
Logged in to emboss.open-bio.org as anonymous.
Cmd: SYST
215: UNIX Type: L8
Cmd: PWD
257: "/"
Cmd: CWD /pub/EMBOSS/fixes
250: Directory successfully changed.
Cmd: PWD
257: "/pub/EMBOSS/fixes"
Cmd: PASV
227: Entering Passive Mode (208,94,50,58,222,100)
Cmd: LIST -a
Could not read reply from control connection -- timed out. (SReadline
1)
_______________________________________________
EMBOSS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/emboss
_______________________________________________
EMBOSS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/emboss
_______________________________________________
EMBOSS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/emboss
