wget times out after issuing the 'LIST -a' command. wget 1.11.4 / Linux (openSUSE 11.2 x86_64)
Gabor On Wed July 28 2010 13:49:17 Chris Dagdigian wrote: > I can't seem to replicate this at all with any of my available FTP > clients or browser-based FTP clients. It works for me from both Mac OS X > clients as well as a CentOS 5.4 based Linux system. > > Is there an FTP client / OS combo that seems in particular not to work? > > -Chris > > Here is one example: > > dag-static:~ dag$ ftp emboss.open-bio.org > > Connected to emboss.open-bio.org. > > 220 (vsFTPd 2.0.1) > > Name (emboss.open-bio.org:dag): anonymous > > 331 Please specify the password. > > Password: > > 230 Login successful. > > Remote system type is UNIX. > > Using binary mode to transfer files. > > ftp> dir > > 229 Entering Extended Passive Mode (|||54472|) > > 150 Here comes the directory listing. > > drwxr-xr-x 8 14 50 4096 May 22 2006 pub > > 226 Directory send OK. > > ftp> cd pub/EMBOSS > > 250 Directory successfully changed. > > ftp> ls > > 229 Entering Extended Passive Mode (|||38343|) > > 150 Here comes the directory listing. > > -rw-rw-r-- 1 501 503 389856 Jul 21 09:25 > > CBSTOOLS-1.0.0.tar.gz -rw-rw-r-- 1 501 503 426218 Jul 21 > > 09:25 DOMAINATRIX-0.1.0.tar.gz -rw-rw-r-- 1 501 503 441025 > > Jul 21 09:25 DOMALIGN-0.1.0.tar.gz -rw-rw-r-- 1 501 503 > > 452787 Jul 21 09:25 DOMSEARCH-0.1.0.tar.gz -rw-rw-r-- 1 501 503 > > 23572243 Jul 19 13:41 EMBOSS-6.3.1.tar.gz lrwxrwxrwx 1 501 503 > > 19 Jul 19 13:42 EMBOSS-latest.tar.gz -> EMBOSS-6.3.1.tar.gz > > -rw-rw-r-- 1 501 503 373798 Jul 21 09:25 EMNU-1.05.tar.gz > > -rw-rw-r-- 1 501 503 415096 Jul 21 09:25 > > ESIM4-1.0.0.tar.gz -rw-rw-r-- 1 501 503 569581 Jul 21 > > 09:25 HMMER-2.3.2.tar.gz -rw-rw-r-- 1 501 503 350791 Jul > > 21 09:25 IPRSCAN-4.3.1.tar.gz drwxrwsr-x 7 501 503 4096 > > Feb 01 2006 Jemboss > > -rw-rw-r-- 1 501 503 513418 Jul 21 09:25 > > MEMENEW-4.0.0.tar.gz -rw-rw-r-- 1 501 503 823636 Jul 21 > > 09:25 MIRA-2.8.2.tar.gz -rw-rw-r-- 1 501 503 435315 Jul 21 > > 09:25 MSE-3.0.0.tar.gz -rw-rw-r-- 1 501 503 328540 Jul 21 > > 09:25 MYEMBOSS-6.3.0.tar.gz -rw-rw-r-- 1 501 503 359488 > > Jul 21 09:25 MYEMBOSSDEMO-6.3.0.tar.gz -rw-rw-r-- 1 501 503 > > 1667760 Jul 21 09:25 PHYLIPNEW-3.69.tar.gz -rw-rw-r-- 1 501 503 > > 571008 Jul 21 09:25 SIGNATURE-0.1.0.tar.gz -rw-rw-r-- 1 501 > > 503 531604 Jul 21 09:25 STRUCTURE-0.1.0.tar.gz -rw-rw-r-- 1 501 > > 503 386287 Jul 21 09:25 TOPO-2.0.0.tar.gz -rw-rw-r-- 1 501 > > 503 652433 Jul 21 09:25 VIENNA-1.7.2.tar.gz drwxrwsr-x 3 > > 522 503 4096 Aug 21 2006 contrib > > drwxrwsr-x 2 501 503 4096 Nov 11 2005 doc > > drwxrwsr-x 3 501 503 4096 Jul 21 09:25 fixes > > drwxrwsr-x 14 501 503 4096 Jul 19 13:39 old > > drwxrwsr-x 2 501 503 4096 Jul 06 2005 tutorials > > drwxrwsr-x 4 501 503 4096 Jul 19 13:36 windows > > 226 Directory send OK. > > ftp> > > Hamish McWilliam wrote: > > Hi Chris, > > > > I'm also seeing problems with the FTP site, but using Mirror rather > > than Transmit, it looks like the server does not like options being > > specified to the LIST command: > > > > Scanning remote directory /pub/EMBOSS > > ---> CWD /pub/EMBOSS > > 250 Directory successfully changed. > > ---> TYPE A > > 200 Switching to ASCII mode. > > ---> PORT 172,21,22,1,171,245 > > 200 PORT command successful. Consider using PASV. > > ---> PASV > > 227 Entering Passive Mode (208,94,50,58,104,178) > > ---> LIST -lat > > timed out > > Cannot get remote directory listing because: timed out > > Cannot get remote directory details (/pub/EMBOSS) > > disconnecting from emboss.open-bio.org > > > > Trying it with a command line client I get the response to hang if I > > try using any options to ls or dir, without options they are fine. > > > > All the best, > > > > Hamish > > > > On 29 May 2010 03:44, Koen van der Drift<[email protected]> wrote: > >> Hi Chris, > >> > >> Did you have a chance to look at this? Just tried again, and Transmit > >> still won't let me access the emboss ftp site. > >> > >> Thanks, > >> > >> - Koen. > >> > >> On Apr 23, 2010, at 11:44 AM, Chris Dagdigian wrote: > >>> In the last few months the open-bio.org servers switched datacenters, > >>> IP addresses and firewall/IDS appliances. Lots of juicy things to look > >>> at and debug. > >>> > >>> Koen - if you have a chance can you send me the IP address that you are > >>> using to connect from? I might be able to find some relevant log > >>> entries with that info. > >>> > >>> -Chris > >>> > >>> Koen van der Drift wrote: > >>>> Just for the record, it used to work with Transmit, this is only from > >>>> the last few months. > >>>> > >>>> - Koen. > >>>> > >>>> On Thu, Apr 22, 2010 at 7:28 PM, Chris Dagdigian<[email protected]> > >>>> > >>>> wrote: > >>>>> Might be an issue with the Juniper Netscreen firewall/IDS security > >>>>> appliance > >>>>> that sits upstream of the EMBOSS FTP server. I'll take a look at the > >>>>> security logs and alerts. > >>>>> > >>>>> -Chris > >>>>> > >>>>> Koen van der Drift wrote: > >>>>>> Hi, > >>>>>> > >>>>>> For a while now I am unable to access the emboss ftp site using the > >>>>>> OS X > >>>>>> client Transmit. Loggin in works fine, but it chokes on the LIST > >>>>>> command. I have no problems accessing it from the command line. I > >>>>>> have added the output from Transmit below. I don't know if this is a > >>>>>> Transmit > >>>>>> or emboss issue, but just wanted to let you know. > >>>>>> > >>>>>> Thanks, > >>>>>> > >>>>>> - Koen. > >>>>>> > >>>>>> > >>>>>> Transmit 3.6.9 Session Transcript > >>>>>> LibNcFTP 3.2.1 (August 13, 2007) compiled for UNIX > >>>>>> Uname: Darwin|exile.local|9.8.0|Darwin Kernel Version 9.8.0: Wed Jul > >>>>>> 15 16:57:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_PPC|Power > >>>>>> Macintosh 220: (vsFTPd 2.0.1) > >>>>>> Connected to emboss.open-bio.org. > >>>>>> Cmd: USER anonymous > >>>>>> 331: Please specify the password. > >>>>>> Cmd: PASS NcFTP@ > >>>>>> 230: Login successful. > >>>>>> Cmd: TYPE A > >>>>>> 200: Switching to ASCII mode. > >>>>>> Logged in to emboss.open-bio.org as anonymous. > >>>>>> Cmd: SYST > >>>>>> 215: UNIX Type: L8 > >>>>>> Cmd: PWD > >>>>>> 257: "/" > >>>>>> Cmd: CWD /pub/EMBOSS/fixes > >>>>>> 250: Directory successfully changed. > >>>>>> Cmd: PWD > >>>>>> 257: "/pub/EMBOSS/fixes" > >>>>>> Cmd: PASV > >>>>>> 227: Entering Passive Mode (208,94,50,58,83,232) > >>>>>> Cmd: LIST -a > >>>>>> Could not read reply from control connection -- timed out. > >>>>>> (SReadline 1) > >>>>>> 220: (vsFTPd 2.0.1) > >>>>>> Connected to emboss.open-bio.org. > >>>>>> Cmd: USER anonymous > >>>>>> 331: Please specify the password. > >>>>>> Cmd: PASS NcFTP@ > >>>>>> 230: Login successful. > >>>>>> Logged in to emboss.open-bio.org as anonymous. > >>>>>> Cmd: SYST > >>>>>> 215: UNIX Type: L8 > >>>>>> Cmd: PWD > >>>>>> 257: "/" > >>>>>> Cmd: CWD /pub/EMBOSS/fixes > >>>>>> 250: Directory successfully changed. > >>>>>> Cmd: PWD > >>>>>> 257: "/pub/EMBOSS/fixes" > >>>>>> Cmd: PASV > >>>>>> 227: Entering Passive Mode (208,94,50,58,222,100) > >>>>>> Cmd: LIST -a > >>>>>> Could not read reply from control connection -- timed out. > >>>>>> (SReadline 1) > >>>>>> > >>>>>> _______________________________________________ > >>>>>> EMBOSS mailing list > >>>>>> [email protected] > >>>>>> http://lists.open-bio.org/mailman/listinfo/emboss > >> > >> _______________________________________________ > >> EMBOSS mailing list > >> [email protected] > >> http://lists.open-bio.org/mailman/listinfo/emboss > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
