On 20/01/2011 08:16, Peter Rice wrote: > On 01/19/11 16:09, Stephen Taylor wrote: >> Hi, >> >> Is EMBOSS planning to release tools that produce SAM format in the near >> future or is it more likely to be on the customary July 15th release? > > The last release EMBOSS 6.3.1 has SAM as an output format for sequences > and pairwise alignments (-oformat sam and -aformat sam respectively). > > What data would you like to represent in SAM format, and are there extra > fields you would like us to include?
Also... Is there a bug in the gff3 output of fuzznuc? ##gff-version 3 ##sequence-region chr21 1 46944323 #!Date 2011-01-20 #!Type DNA #!Source-version EMBOSS 6.3.1 chr21 fuzznuc nucleotide_motif 13362906 13362942 37.000 + . ID="chr21.1";note="*pat pattern" It would be nice to actually show the pattern matched in the note field. Thanks, Steve _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
