Greetings, You can use BioPerl for this. EMBOSS and perl work well together. Here is a link: http://www.bioperl.org/wiki/HOWTO:SeqIO
cheers, Tom MMI DNA Services Core Facility 503-494-2442 kellert at ohsu.edu Office: 6588 RJH (CROET/BasicScience) OHSU Shared Resources On Nov 29, 2011, at 9:36 AM, Peter Rice wrote: > On 29/11/2011 17:13, Peter Cock wrote: >> Dear all, >> >> I am hoping to convert some ABI "Sanger" capillary files >> into SCF (i.e. *.ab1 to *.scf), and currently I've installed >> the Staden io_lib just to get their convert_trace tool. >> >> Does EMBOSS support SCF files as defined here: >> http://staden.sourceforge.net/formats.html >> >> I presume these are different from the "Staden" format mentioned here: >> http://emboss.sourceforge.net/docs/themes/SequenceFormats.html > > "Staden" is GCG's text only staden format with an id in angle brackets. > We also support experiment format. > > I'm looking into formats now - I'll add SCF if I can do it before Xmas. > > regards, > > Peter Rice > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
