On Nov 29, 2011, at 12:35 PM, Peter Cock wrote: > On Tue, Nov 29, 2011 at 5:53 PM, Tom Keller <[email protected]> wrote: >> Greetings, >> You can use BioPerl for this. EMBOSS and perl work well together. >> Here is a link: http://www.bioperl.org/wiki/HOWTO:SeqIO >> >> cheers, >> Tom > > Doesn't BioPerl just use the Staden libraries for this internally?
Yes, and it uses an old version as well (via bioperl-ext). Much of this effort was to go into the biolib initiative for creating cross-lang bindings using swig, but that seems to be silent at the moment. I'm surprised Python doesn't have io_lib bindings. > Either way, Perl and I don't work so well together, so I'm happier > using Staden's trace_convert directly ;) > > Peter Heh. chris _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
