On 2 December 2022, Colin Baxter wrote:

I have now used your set-up, exactly I think, using "emacs-28.2 -q" and
the latest ESS and I still cannot reproduce your error. For me, the src
source block gives the expected result. I'm stuck!

Strange! But it's been fixed in Org, so whatever caused it can remain a mystery. R and Org are back to working nicely (except for a problem with images not being refreshed, but that's to do with images generally, not just R).

  commit 4564627415b1e609acdddd6e92b33d51c8e427c1 (origin/bugfix)
  Author: Ihor Radchenko <yanta...@posteo.net>
  Date:   Fri Dec 2 13:57:14 2022 +0800

      org-babel-comit-with-output: Fix when prompt is emitted partially

      * lisp/ob-comint.el (org-babel-comint-with-output): Do not rely on
      output filter when detecting prompt lines.  Search for
      `comint-prompt-regexp' in the full output after applying the filter.
      This is needed when the filter is supplied with partial prompts.



William Denton
Librarian, artist and licensed private investigator.
Toronto, Canada

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