The "summary and folder mismatch even after a sync" error is pretty common
in Evolution. Usually just closing the program and re-opening it is enough
to get rid of the error. Sometimes, it's necessary to delete the .index,
.index.data and .cmeta files, then give it time to resync. I've done all
that.

I also moved .evolution/mail/local/*, started with an empty inbox, then used
the import function on the old one. After doing so, the problem occurs
again, which suggests there's something about the contents of the inbox that
Evolution doesn't like.

I have 35,000 email messages stored here, and I'd like to keep them in
Evolution where I can sort them, search them and arrange things with search
folders. I'd be happy to delete a couple corrupted messages if that's the
issue. The difficulty is finding them. If there's something specific to look
for, I can write a script to search the inbox for corrupted messages. If
there are other solutions or workarounds, I'd really like to hear them.
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