Hi, Alexandre, Thanks for arranging this for us. As you can see, this set of data and your queries have some unique challenges for us. We are very happy that we have them in the suit of tests.
John On 12/10/2009 5:54 AM, Alexandre Maurel wrote: > Hi John, > > I have asked the owner of the data set for the permission to use it as > part of the built-in tests , he accepts with some restrictions. > So I have generated a new file for this purpose. This one can be used in > the built-in tests. > Please delete the other one. > > Regards, > > Alexandre > > [email protected] a écrit : >> Send FastBit-users mailing list submissions to >> [email protected] >> >> To subscribe or unsubscribe via the World Wide Web, visit >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> or, via email, send a message with subject or body 'help' to >> [email protected] >> >> You can reach the person managing the list at >> [email protected] >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of FastBit-users digest..." >> >> >> Today's Topics: >> >> 1. Re: query error (Alexandre Maurel) >> 2. Re: query error (K. John Wu) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Tue, 08 Dec 2009 10:30:47 +0100 >> From: Alexandre Maurel <[email protected]> >> Subject: Re: [FastBit-users] query error >> To: [email protected] >> Message-ID: <[email protected]> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> Hi John, >> >> Sorry for this late reply, some how I miss your answer. >> >> Here is the command line I used : >> >> .\Debug\ardea.exe -d .\testCase\dimensions\ColPart -m >> Barcode:k,Row:f,Col:f,Filter:f,Exposure_time:f,Cycle:f,Image:k,Temperature:f,Sample_name:k,Array:k,Sample_volume:f,Inhibitor:k,Inhibitor_conc_:f,Antibody:k,ATP_conc_:f,Visual_QC:k,Strip:f,Imatinib_Resistant:f,Imatinib:k >> >> -t .\testCase\Array.txt >> >> Note that this command line is stored as the description parameter of >> the partition generated by ardea.exe (see -part.txt file I sent ...) ;-) >> >> Regards, >> >> Alexandre >> >> [email protected] a ?crit : >> >>> Send FastBit-users mailing list submissions to >>> [email protected] >>> >>> To subscribe or unsubscribe via the World Wide Web, visit >>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >>> or, via email, send a message with subject or body 'help' to >>> [email protected] >>> >>> You can reach the person managing the list at >>> [email protected] >>> >>> When replying, please edit your Subject line so it is more specific >>> than "Re: Contents of FastBit-users digest..." >>> >>> >>> Today's Topics: >>> >>> 1. Re: query error (Alexandre Maurel) >>> 2. Re: query error (K. John Wu) >>> >>> >>> ---------------------------------------------------------------------- >>> >>> Message: 1 >>> Date: Thu, 03 Dec 2009 10:41:35 +0100 >>> From: Alexandre Maurel <[email protected]> >>> Subject: Re: [FastBit-users] query error >>> To: [email protected] >>> Message-ID: <[email protected]> >>> Content-Type: text/plain; charset="iso-8859-1" >>> >>> Hi John, >>> >>> The problem is still there. >>> As attached document you will find ibis log file , generated by the >>> following command, >>> >>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>> Inhibitor = 'Imatinib'" >>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>> Inhibitor IN ('Imatinib')" >>> >>> Regards, >>> >>> Alexandre >>> >>> [email protected] a ?crit : >>> >>>> Send FastBit-users mailing list submissions to >>>> [email protected] >>>> >>>> Message: 2 >>>> Date: Mon, 23 Nov 2009 09:55:20 -0800 >>>> From: "K. John Wu" <[email protected]> >>>> Subject: Re: [FastBit-users] query error >>>> To: FastBit Users <[email protected]> >>>> Message-ID: <[email protected]> >>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>>> >>>> Hi, Alexandre, >>>> >>>> Thanks for reporting the problem and exploring the solutions. It >>>> turned out that we can tweak the lexer a little to recognize all >>>> quoted strings as string literals -- which eliminate the ambiguity >>>> in whether a string a column name or a string literal and correctly >>>> represents the original intend of your query expression. The change >>>> has been checked into the SVN repository. Please give the nightly >>>> snapshot a try when you get the chance. >>>> >>>> John >>>> >>>> PS: The nightly snapshot is available at >>>> <https://codeforge.lbl.gov/snapshots.php?group_id=44> and it is >>>> built in the early morning hours Pacific Time -- which means you >>>> will need to wait till tomorrow morning in order to get your hand on >>>> it. If you want to try it earlier, please let me know, I will send >>>> you the source code separately. >>>> >>>> >>> -------------- next part -------------- >>> An embedded and charset-unspecified text was scrubbed... >>> Name: log.txt >>> Url: >>> http://hpcrdm.lbl.gov/pipermail/fastbit-users/attachments/20091203/08d6c17e/attachment-0001.txt >>> >>> >>> ------------------------------ >>> >>> Message: 2 >>> Date: Thu, 03 Dec 2009 10:35:11 -0800 >>> From: "K. John Wu" <[email protected]> >>> Subject: Re: [FastBit-users] query error >>> To: FastBit Users <[email protected]> >>> Message-ID: <[email protected]> >>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>> >>> Hi, Alexandre, >>> >>> Thanks for getting back to us. To make it a little easier for us to >>> verify the problem has been fixed correctly, would you mind send us >>> the column names and types you used to process the CSV data in >>> Array.txt (you sent us earlier)? I think I am fixing correctly this >>> time around, but need to verify it to be sure ;-) >>> >>> John >>> >>> PS: You can either send us the command line of ardea you used process >>> Array.txt or a file containing the names and types in the order as >>> they appear in the file Array.txt. The content of -part.txt has all >>> the right names and types, but they are not in the right order -- I >>> have trouble matching the orders. >>> >>> >>> On 12/3/2009 1:41 AM, Alexandre Maurel wrote: >>> >>>> Hi John, >>>> >>>> The problem is still there. >>>> As attached document you will find ibis log file , generated by the >>>> following command, >>>> >>>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>>> Inhibitor = 'Imatinib'" >>>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>>> Inhibitor IN ('Imatinib')" >>>> >>>> Regards, >>>> >>>> Alexandre >>>> >>>> [email protected] a ?crit : >>>> >>>>> Send FastBit-users mailing list submissions to >>>>> [email protected] >>>>> >>>>> Message: 2 >>>>> Date: Mon, 23 Nov 2009 09:55:20 -0800 >>>>> From: "K. John Wu" <[email protected]> >>>>> Subject: Re: [FastBit-users] query error >>>>> To: FastBit Users <[email protected]> >>>>> Message-ID: <[email protected]> >>>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>>>> >>>>> Hi, Alexandre, >>>>> >>>>> Thanks for reporting the problem and exploring the solutions. It >>>>> turned out that we can tweak the lexer a little to recognize all >>>>> quoted strings as string literals -- which eliminate the ambiguity >>>>> in whether a string a column name or a string literal and correctly >>>>> represents the original intend of your query expression. The >>>>> change has been checked into the SVN repository. Please give the >>>>> nightly snapshot a try when you get the chance. >>>>> >>>>> John >>>>> >>>>> PS: The nightly snapshot is available at >>>>> <https://codeforge.lbl.gov/snapshots.php?group_id=44> and it is >>>>> built in the early morning hours Pacific Time -- which means you >>>>> will need to wait till tomorrow morning in order to get your hand >>>>> on it. If you want to try it earlier, please let me know, I will >>>>> send you the source code separately. >>>>> >>>>> >>>> ------------------------------------------------------------------------ >>>> >>>> >>>> _______________________________________________ >>>> FastBit-users mailing list >>>> [email protected] >>>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >>>> >>> ------------------------------ >>> >>> _______________________________________________ >>> FastBit-users mailing list >>> [email protected] >>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >>> >>> >>> End of FastBit-users Digest, Vol 28, Issue 1 >>> ******************************************** >>> >>> >> >> >> ------------------------------ >> >> Message: 2 >> Date: Tue, 08 Dec 2009 10:21:47 -0800 >> From: "K. John Wu" <[email protected]> >> Subject: Re: [FastBit-users] query error >> To: FastBit Users <[email protected]> >> Message-ID: <[email protected]> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> Hi, Alexandre, >> >> Thanks for the information. I have just successfully run the query >> that was giving you trouble. The code has been checked into the SVN >> repository. The nightly snapshot is available at >> <https://codeforge.lbl.gov/snapshots.php?group_id=44> and is generated >> daily around 2AM PST. When you get a chance, please give it a try and >> let us know if it works for you. >> >> We would like to turn your test data (Array.txt) and sample query into >> part of the built-in tests. Would you mind grand us the permission to >> do so? In addition, would you like to add a few more queries for this >> purpose? >> >> John >> >> >> >> ------------------------------ >> >> _______________________________________________ >> FastBit-users mailing list >> [email protected] >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> >> >> End of FastBit-users Digest, Vol 28, Issue 2 >> ******************************************** >> >> > > > ------------------------------------------------------------------------ > > _______________________________________________ > FastBit-users mailing list > [email protected] > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users _______________________________________________ FastBit-users mailing list [email protected] https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users
