Hi, Alexandre, I have checked in a file named maurel.csv under the directory tests along with two test cases extracted from the email exchanges. To run the tests, cd to directory tests and type 'make check-maurel' (after you have run ./configure in the top level directory). Please let us know if you would like any additions or modifications to the data file or the test cases. Thanks.
John PS: The file tests/Makefile.am has the original definition of the test cases if you want to make any modifications. PPS: The latest source code is available as the nightly snapshot from <https://codeforge.lbl.gov/snapshots.php?group_id=44>. The snaphot appears to be updated daily around 2 or 3 AM PST. To verify that the snapshot has today's changes, please take a look at the beginning of ChangeLog and make sure it has today's entries (under 2009-12-15). On 12/10/2009 5:54 AM, Alexandre Maurel wrote: > Hi John, > > I have asked the owner of the data set for the permission to use it as > part of the built-in tests , he accepts with some restrictions. > So I have generated a new file for this purpose. This one can be used in > the built-in tests. > Please delete the other one. > > Regards, > > Alexandre > > [email protected] a écrit : >> Send FastBit-users mailing list submissions to >> [email protected] >> >> To subscribe or unsubscribe via the World Wide Web, visit >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> or, via email, send a message with subject or body 'help' to >> [email protected] >> >> You can reach the person managing the list at >> [email protected] >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of FastBit-users digest..." >> >> >> Today's Topics: >> >> 1. Re: query error (Alexandre Maurel) >> 2. Re: query error (K. John Wu) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Tue, 08 Dec 2009 10:30:47 +0100 >> From: Alexandre Maurel <[email protected]> >> Subject: Re: [FastBit-users] query error >> To: [email protected] >> Message-ID: <[email protected]> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> Hi John, >> >> Sorry for this late reply, some how I miss your answer. >> >> Here is the command line I used : >> >> .\Debug\ardea.exe -d .\testCase\dimensions\ColPart -m >> Barcode:k,Row:f,Col:f,Filter:f,Exposure_time:f,Cycle:f,Image:k,Temperature:f,Sample_name:k,Array:k,Sample_volume:f,Inhibitor:k,Inhibitor_conc_:f,Antibody:k,ATP_conc_:f,Visual_QC:k,Strip:f,Imatinib_Resistant:f,Imatinib:k >> -t .\testCase\Array.txt >> >> Note that this command line is stored as the description parameter of >> the partition generated by ardea.exe (see -part.txt file I sent ...) ;-) >> >> Regards, >> >> Alexandre >> >> [email protected] a ?crit : >>> Send FastBit-users mailing list submissions to >>> [email protected] >>> >>> To subscribe or unsubscribe via the World Wide Web, visit >>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >>> or, via email, send a message with subject or body 'help' to >>> [email protected] >>> >>> You can reach the person managing the list at >>> [email protected] >>> >>> When replying, please edit your Subject line so it is more specific >>> than "Re: Contents of FastBit-users digest..." >>> >>> >>> Today's Topics: >>> >>> 1. Re: query error (Alexandre Maurel) >>> 2. Re: query error (K. John Wu) >>> >>> >>> ---------------------------------------------------------------------- >>> >>> Message: 1 >>> Date: Thu, 03 Dec 2009 10:41:35 +0100 >>> From: Alexandre Maurel <[email protected]> >>> Subject: Re: [FastBit-users] query error >>> To: [email protected] >>> Message-ID: <[email protected]> >>> Content-Type: text/plain; charset="iso-8859-1" >>> >>> Hi John, >>> >>> The problem is still there. >>> As attached document you will find ibis log file , generated by the >>> following command, >>> >>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>> Inhibitor = 'Imatinib'" >>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>> Inhibitor IN ('Imatinib')" >>> >>> Regards, >>> >>> Alexandre >>> >>> [email protected] a ?crit : >>>> Send FastBit-users mailing list submissions to >>>> [email protected] >>>> >>>> Message: 2 >>>> Date: Mon, 23 Nov 2009 09:55:20 -0800 >>>> From: "K. John Wu" <[email protected]> >>>> Subject: Re: [FastBit-users] query error >>>> To: FastBit Users <[email protected]> >>>> Message-ID: <[email protected]> >>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>>> >>>> Hi, Alexandre, >>>> >>>> Thanks for reporting the problem and exploring the solutions. It >>>> turned out that we can tweak the lexer a little to recognize all >>>> quoted strings as string literals -- which eliminate the ambiguity >>>> in whether a string a column name or a string literal and correctly >>>> represents the original intend of your query expression. The change >>>> has been checked into the SVN repository. Please give the nightly >>>> snapshot a try when you get the chance. >>>> >>>> John >>>> >>>> PS: The nightly snapshot is available at >>>> <https://codeforge.lbl.gov/snapshots.php?group_id=44> and it is >>>> built in the early morning hours Pacific Time -- which means you >>>> will need to wait till tomorrow morning in order to get your hand on >>>> it. If you want to try it earlier, please let me know, I will send >>>> you the source code separately. >>>> >>> -------------- next part -------------- >>> An embedded and charset-unspecified text was scrubbed... >>> Name: log.txt >>> Url: >>> http://hpcrdm.lbl.gov/pipermail/fastbit-users/attachments/20091203/08d6c17e/attachment-0001.txt >>> >>> ------------------------------ >>> >>> Message: 2 >>> Date: Thu, 03 Dec 2009 10:35:11 -0800 >>> From: "K. John Wu" <[email protected]> >>> Subject: Re: [FastBit-users] query error >>> To: FastBit Users <[email protected]> >>> Message-ID: <[email protected]> >>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>> >>> Hi, Alexandre, >>> >>> Thanks for getting back to us. To make it a little easier for us to >>> verify the problem has been fixed correctly, would you mind send us >>> the column names and types you used to process the CSV data in >>> Array.txt (you sent us earlier)? I think I am fixing correctly this >>> time around, but need to verify it to be sure ;-) >>> >>> John >>> >>> PS: You can either send us the command line of ardea you used process >>> Array.txt or a file containing the names and types in the order as >>> they appear in the file Array.txt. The content of -part.txt has all >>> the right names and types, but they are not in the right order -- I >>> have trouble matching the orders. >>> >>> >>> On 12/3/2009 1:41 AM, Alexandre Maurel wrote: >>>> Hi John, >>>> >>>> The problem is still there. >>>> As attached document you will find ibis log file , generated by the >>>> following command, >>>> >>>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>>> Inhibitor = 'Imatinib'" >>>> %IBIS% -l log.txt -d .\dimensions\ColPart -q "select Inhibitor where >>>> Inhibitor IN ('Imatinib')" >>>> >>>> Regards, >>>> >>>> Alexandre >>>> >>>> [email protected] a ?crit : >>>>> Send FastBit-users mailing list submissions to >>>>> [email protected] >>>>> >>>>> Message: 2 >>>>> Date: Mon, 23 Nov 2009 09:55:20 -0800 >>>>> From: "K. John Wu" <[email protected]> >>>>> Subject: Re: [FastBit-users] query error >>>>> To: FastBit Users <[email protected]> >>>>> Message-ID: <[email protected]> >>>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>>>> >>>>> Hi, Alexandre, >>>>> >>>>> Thanks for reporting the problem and exploring the solutions. It >>>>> turned out that we can tweak the lexer a little to recognize all >>>>> quoted strings as string literals -- which eliminate the ambiguity >>>>> in whether a string a column name or a string literal and correctly >>>>> represents the original intend of your query expression. The change >>>>> has been checked into the SVN repository. Please give the nightly >>>>> snapshot a try when you get the chance. >>>>> >>>>> John >>>>> >>>>> PS: The nightly snapshot is available at >>>>> <https://codeforge.lbl.gov/snapshots.php?group_id=44> and it is >>>>> built in the early morning hours Pacific Time -- which means you >>>>> will need to wait till tomorrow morning in order to get your hand >>>>> on it. If you want to try it earlier, please let me know, I will >>>>> send you the source code separately. >>>>> >>>> ------------------------------------------------------------------------ >>>> >>>> >>>> _______________________________________________ >>>> FastBit-users mailing list >>>> [email protected] >>>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >>> ------------------------------ >>> >>> _______________________________________________ >>> FastBit-users mailing list >>> [email protected] >>> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >>> >>> >>> End of FastBit-users Digest, Vol 28, Issue 1 >>> ******************************************** >>> >> >> >> ------------------------------ >> >> Message: 2 >> Date: Tue, 08 Dec 2009 10:21:47 -0800 >> From: "K. John Wu" <[email protected]> >> Subject: Re: [FastBit-users] query error >> To: FastBit Users <[email protected]> >> Message-ID: <[email protected]> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> Hi, Alexandre, >> >> Thanks for the information. I have just successfully run the query >> that was giving you trouble. The code has been checked into the SVN >> repository. The nightly snapshot is available at >> <https://codeforge.lbl.gov/snapshots.php?group_id=44> and is generated >> daily around 2AM PST. When you get a chance, please give it a try and >> let us know if it works for you. >> >> We would like to turn your test data (Array.txt) and sample query into >> part of the built-in tests. Would you mind grand us the permission to >> do so? In addition, would you like to add a few more queries for this >> purpose? >> >> John >> >> >> >> ------------------------------ >> >> _______________________________________________ >> FastBit-users mailing list >> [email protected] >> https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users >> >> >> End of FastBit-users Digest, Vol 28, Issue 2 >> ******************************************** >> > > > _______________________________________________ > FastBit-users mailing list > [email protected] > https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users _______________________________________________ FastBit-users mailing list [email protected] https://hpcrdm.lbl.gov/cgi-bin/mailman/listinfo/fastbit-users
