Adam, In this case, the permission denied error would be caused by the user that Tomcat runs as not being able to write to the directory. This may be different than the user that you use to connect to Fedora. On my server, for instance, I have a dedicated tomcat user that Tomcat runs as. My Fedora database connections are made using a fedora user.
You can check to see what Tomcat is running as by looking at the process list. A "ps auxww | grep tomcat" (on Linux) will show you the process user. Jason On 9/24/09 1:13 PM, Adam B. Ross wrote: > The fedora.log file does indeed provide greater insight. I traced this > problem to the fedora/data/ directory being owned by root, I imagine caused > by my running fedora-rebuild as root. I have now tried chown'ing the files to > the fedora user and re-running the rebuild as the fedora user. That provided > the same error, as did removing the lock files entirely and restarting > tomcat. In both cases, I get the same FileNotFoundException/Permission Denied > error. > > Giving the data/ directory to tomcat results in broader-sounding errors, such > as failure to recover the existing database. > > **** > FATAL 2009-09-21 10:32:23.006 [main] (Server) Module > (fedora.server.resourceIndex.ResourceIndex) failed to initialize > > fedora.server.errors.ModuleInitializationException: Error initializing RI > > > at > fedora.server.resourceIndex.ResourceIndexModule.postInitModule(ResourceIndexModule.java:133) > > <...> > Caused by: org.trippi.TrippiException: Couldn't create local database > <...> > Caused by: org.mulgara.query.QueryException: Couldn't create local database > <...> > Caused by: org.mulgara.server.SessionFactoryException: Could not instantiate > TripleStoreImplementation from configuration. > <...> > Caused by: java.lang.reflect.InvocationTargetException > <...> > Caused by: org.mulgara.store.stringpool.StringPoolException: Couldn't > construct string pool > <...> > Caused by: java.io.FileNotFoundException: > /home/fedora/operational/data/resourceIndex/xaStringPool/xa11.sp.lock > (Permission denied) > > ----- Original Message ----- > From: "Chris Wilper" <[email protected]> > To: "Adam B. Ross" <[email protected]> > Cc: "fedora-commons-users" <[email protected]> > Sent: Wednesday, September 23, 2009 6:00:48 AM GMT -08:00 US/Canada Pacific > Subject: Re: [Fedora-commons-users] [500 Internal Server Error] The Fedora > Server is Not Yet Running > > Hi Adam, > > Usually this error will be thrown if you try to hit any of Fedora's > APIs while Fedora is still in the process of starting up (it usually > takes a few seconds, rarely over 30). But if you're getting this > error after waiting a minute or two, it looks like Fedora is having > trouble starting. Check your $FEDORA_HOME/server/logs/fedora.log file > (near the end) for hints on why. > > - Chris > > On Tue, Sep 22, 2009 at 1:17 PM, Adam B. Ross <[email protected]> wrote: >> I am getting a 500 Error Code, as the Fedora Server is not coming back when >> I restart Tomcat. >> >> I used the fedora-rebuild.sh script, and when done, I had a Fedora error >> page. Troubleshooting efforts have revealed the Tomcat process hadn't quit >> properly before I ran the script. >> >> I have proceeded to stop and start the fedora apps and clear them from the >> Tomcat work/ directory for Tomcat to repopulate, both to no avail. Any >> Tomcatters out there with the next step? >> >> **************************************** >> 500 Internal Server Error >> Error getting Fedora Server instance: The Fedora server is not yet running. >> >> javax.servlet.ServletException: Error getting Fedora Server instance: The >> Fedora server is not yet running. >> at >> fedora.server.access.FieldSearchServlet.init(FieldSearchServlet.java:734) >> at javax.servlet.GenericServlet.init(GenericServlet.java:211) >> at >> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1105) >> at >> org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:757) >> at >> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:130) >> at >> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) >> at >> org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:524) >> at >> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) >> at >> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) >> at >> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) >> at >> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) >> at >> org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) >> at >> org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) >> at >> org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) >> at >> org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) >> at >> org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) >> at java.lang.Thread.run(Thread.java:619) >> >> ------------------------------------------------------------------------------ >> Come build with us! The BlackBerry® Developer Conference in SF, CA >> is the only developer event you need to attend this year. Jumpstart your >> developing skills, take BlackBerry mobile applications to market and stay >> ahead of the curve. Join us from November 9-12, 2009. Register now! >> http://p.sf.net/sfu/devconf >> _______________________________________________ >> Fedora-commons-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/fedora-commons-users >> > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry® Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart your > developing skills, take BlackBerry mobile applications to market and stay > ahead of the curve. Join us from November 9-12, 2009. Register now! > http://p.sf.net/sfu/devconf > _______________________________________________ > Fedora-commons-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/fedora-commons-users -- Jason Nugent Systems Programmer/Database Developer Electronic Text Centre University of New Brunswick [email protected] (506) 447 3177 ------------------------------------------------------------------------------ Come build with us! The BlackBerry® Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9-12, 2009. Register now! http://p.sf.net/sfu/devconf _______________________________________________ Fedora-commons-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/fedora-commons-users
