Copying from my JIRA comments:
"I don't think there are any messages broadcast on the indexing of a
rebuild- you have to independently rebuild the instances. Given that, the
easiest workaround for this problem is to comment out the
ManagementDelegate configuration when running the Rebuilder. For 3.7, it
should be easy to have the RebuildServer ignore the ManagementDelegate
module (mark it as abstract, as it does the Management module)."
Regards,
Ben
On Thu, Jul 18, 2013 at 1:50 PM, Benjamin Armintor <[email protected]>wrote:
> Javier:
> Could you please attach your .fcfg file for the server in error?
>
> Thanks,
> Ben
>
>
> On Thu, Jul 18, 2013 at 12:23 PM, Benjamin Armintor <[email protected]>wrote:
>
>> Javier:
>> Thanks for this report, too! I've stubbed out an issue to track this
>> problem at https://jira.duraspace.org/browse/FCREPO-1194. We will try to
>> confirm this one as well, and fix for 3.7 if necessary.
>>
>> - Ben
>>
>>
>> On Wed, Jul 17, 2013 at 9:28 PM, Javier Molina <
>> [email protected]> wrote:
>>
>>> Hi all,
>>>
>>> I am in the process to upgrade from Fedora 3.3.1 to 3.6.2
>>>
>>> I just noticed that after enabling journaling the fedora-rebuild.sh
>>> script won't work anymore.
>>>
>>>
>>> Basically in fedora.fcfg I added the relevant section for normal mode as
>>> described here
>>> https://wiki.duraspace.org/display/FEDORA36/Journaling#Journaling-impl-config
>>>
>>> When starting the fedora web applications everything looks fine but,
>>> when stopping it and running fedora-rebuild.sh I get a Error creating
>>> bean with name 'org.fcrepo.server.security.Authorization': Bean definition
>>> is abstract.
>>>
>>>
>>> This suggest to me that enabling journaling, introduces more spring
>>> beans behind the scenes but I have not been able to figure out where or
>>> how, enabling DEBUG logging for springframework in logback.xml shows that
>>> it is loading beans from the standard locations in server/conf/spring but
>>> it does not reveal much detail about the other locations where it is
>>> loadging beans from.
>>>
>>> This is a snippet:
>>>
>>> ************************************************************************
>>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.security.AuthorizationConfiguration$created#546ce79d]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.security.AuthorizationConfiguration$created#42dd8bec]
>>> DEBUG (DefaultNamespaceHandlerResolver) Loaded NamespaceHandler
>>> mappings: {
>>> http://www.springframework.org/schema/task=org.springframework.scheduling.config.TaskNamespaceHandler,
>>>
>>> http://activemq.apache.org/schema/core=org.apache.xbean.spring.context.v2.XBeanNamespaceHandler,
>>>
>>> http://www.springframework.org/schema/p=org.springframework.beans.factory.xml.SimplePropertyNamespaceHandler,
>>>
>>> http://www.w3.org/2006/07/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>>
>>> http://www.springframework.org/schema/lang=org.springframework.scripting.config.LangNamespaceHandler,
>>>
>>> http://www.springframework.org/schema/util=org.springframework.beans.factory.xml.UtilNamespaceHandler,
>>> http://cxf.apache.org/jaxws=org.apache.cxf.jaxws.spring.NamespaceHandler,
>>>
>>> http://cxf.apache.org/policy=org.apache.cxf.ws.policy.spring.NamespaceHandler,
>>>
>>> http://www.springframework.org/schema/jee=org.springframework.ejb.config.JeeNamespaceHandler,
>>>
>>> http://cxf.apache.org/transports/http/configuration=org.apache.cxf.transport.http.spring.NamespaceHandler,
>>>
>>> http://www.springframework.org/schema/tx=org.springframework.transaction.config.TxNamespaceHandler,
>>>
>>> http://cxf.apache.org/ws/addressing=org.apache.cxf.ws.addressing.spring.NamespaceHandler,
>>>
>>> http://cxf.apache.org/simple=org.apache.cxf.frontend.spring.NamespaceHandler,
>>>
>>> http://www.springframework.org/schema/aop=org.springframework.aop.config.AopNamespaceHandler,
>>>
>>> http://www.springframework.org/schema/context=org.springframework.context.config.ContextNamespaceHandler,
>>> http://cxf.apache.org/core=org.apache.cxf.bus.spring.NamespaceHandler,
>>> http://cxf.apache.org/jaxrs=org.apache.cxf.jaxrs.spring.NamespaceHandler,
>>>
>>> http://www.springframework.org/schema/security=org.springframework.security.config.SecurityNamespaceHandler,
>>>
>>> http://schemas.xmlsoap.org/ws/2004/09/policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>>
>>> http://www.w3.org/ns/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>>
>>> http://cxf.apache.org/bindings/soap=org.apache.cxf.binding.soap.spring.NamespaceHandler
>>> }
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#245a690]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#2aba391a]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#27faefe0]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#4b9a6fa1]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#816d9ce]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#14356788]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#3e201c15]
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.config.Parameter#2e13c690]
>>> DEBUG (BeanDefinitionParserDelegate) Using generated bean name
>>> [util:list#14512f92] for nested custom element 'util:list'
>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>> specified - using generated bean name
>>> [org.fcrepo.server.security.impl.SimplePolicyLoader#4a5844db]
>>> INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
>>> [/opt/fedora/fedora-3.6/server/config/spring/doobjectvalidator.xml]
>>> DEBUG (DefaultDocumentLoader) Using JAXP provider
>>> [org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
>>> DEBUG (PluggableSchemaResolver) Found XML schema [
>>> http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
>>> classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
>>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>>> DEBUG (BeanDefinitionParserDelegate) No XML 'id' specified - using
>>> 'org.fcrepo.server.validation.DOObjectValidator' as bean name and [] as
>>> aliases
>>> INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
>>> [/opt/fedora/fedora-3.6/server/config/spring/triple-generator.xml]
>>> DEBUG (DefaultDocumentLoader) Using JAXP provider
>>> [org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
>>> DEBUG (PluggableSchemaResolver) Found XML schema [
>>> http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
>>> classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
>>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>>> INFO (GenericApplicationContext) Refreshing
>>> org.springframework.context.support.GenericApplicationContext@3e0d6c32:
>>> startup date [Thu Jul 18 11:20:35 EST 2013]; parent:
>>> org.springframework.context.support.GenericApplicationContext@42e50215
>>> DEBUG (GenericApplicationContext) Bean factory for
>>> org.springframework.context.support.GenericApplicationContext@3e0d6c32:
>>> org.springframework.beans.factory.support.DefaultListableBeanFactory@50e68513:
>>> defining beans
>>> [org.springframework.context.annotation.CommonAnnotationBeanPostProcessor,org.fcrepo.server.security.ContextRegistry,org.fcrepo.server.security.Authorization,org.fcrepo.server.security.AuthorizationConfiguration,policyFinderModules,org.fcrepo.server.security.ContextAttributeFinderModule,org.fcrepo.server.security.ResourceAttributeFinderModule,attributeFinderModules,resourceFinderModules,PDPConfigurationFactory,LegacyPDPConfig,org.fcrepo.server.security.PolicyEnforcementPoint,org.fcrepo.server.validation.DOObjectValidator,org.trippi.io.TripleIteratorFactory,Object-3.0,ContentModel-3.0,ServiceDefinition-3.0,ServiceDeployment-3.0,org.fcrepo.server.resourceIndex.TripleGenerator,org.fcrepo.server.resourceIndex.ModelBasedTripleGenerator,localMySQLPool,localDerbyPool,localOraclePool,localPostgreSQLPool,localMulgaraTriplestore,localPostgresMPTTriplestore,apimUpdateMessages,apimAccessMessages,org.fcrepo.server.storage.lowlevel.ILowlevelStorage,org.fcrepo.server.storage.lowlevel.ILowlevelStorageConfiguration,org.fcrepo.server.security.BackendSecurity,org.fcrepo.server.security.BackendSecurityConfiguration,org.fcrepo.server.storage.DOManager,org.fcrepo.server.storage.DOManagerConfiguration,org.fcrepo.server.management.Management,org.fcrepo.server.management.ManagementConfiguration,org.fcrepo.server.management.ManagementDelegate,org.fcrepo.server.management.ManagementDelegateConfiguration,org.fcrepo.server.access.Access,org.fcrepo.server.access.AccessConfiguration,org.fcrepo.server.access.DynamicAccess,org.fcrepo.server.access.DynamicAccessConfiguration,org.fcrepo.server.search.FieldSearch,org.fcrepo.server.search.FieldSearchConfiguration,org.fcrepo.server.resourceIndex.ResourceIndex,org.fcrepo.server.resourceIndex.ResourceIndexConfiguration,org.fcrepo.oai.OAIProvider,org.fcrepo.oai.OAIProviderConfiguration,org.fcrepo.server.storage.translation.DOTranslator,org.fcrepo.server.storage.translation.DOTranslatorConfiguration,org.fcrepo.server.management.PIDGenerator,org.fcrepo.server.management.PIDGeneratorConfiguration,org.fcrepo.server.messaging.Messaging,org.fcrepo.server.messaging.MessagingConfiguration,org.fcrepo.server.storage.ConnectionPoolManager,org.fcrepo.server.storage.ConnectionPoolManagerConfiguration,org.fcrepo.server.validation.DOValidator,org.fcrepo.server.validation.DOValidatorConfiguration,org.fcrepo.server.storage.ExternalContentManager,org.fcrepo.server.storage.ExternalContentManagerConfiguration,org.trippi.TriplestoreConnector,org.fcrepo.server.resourceIndex.ResourceIndexRebuilder,org.fcrepo.server.utilities.rebuild.SQLRebuilder];
>>> parent:
>>> org.springframework.beans.factory.support.DefaultListableBeanFactory@7795c14c
>>> DEBUG (DefaultListableBeanFactory) Creating shared instance of singleton
>>> bean
>>> 'org.springframework.context.annotation.CommonAnnotationBeanPostProcessor'
>>>
>>> ****************************************************
>>>
>>> And here below is the output when running fedora-rebuild.sh with the
>>> default logback.xml config.
>>>
>>> Has anyone come across this? Any suggestion to fix it?
>>>
>>> Thanks,
>>> Javier
>>>
>>>
>>> ************************************************************
>>> javier@genesis-cl:/opt/fedora/fedora-3.6/server/bin$
>>> ./fedora-rebuild.sh
>>>
>>> Fedora Rebuild Utility
>>> ..........................
>>>
>>> WARNING: Live rebuilds are not currently supported.
>>> Make sure your server is stopped before continuing.
>>>
>>> Server directory is /opt/fedora/fedora-3.6/server
>>>
>>> ---------------------------------------------------------------------
>>>
>>> ERROR (Server) Fatal error while starting server
>>> org.springframework.beans.factory.BeanIsAbstractException: Error
>>> creating bean with name 'org.fcrepo.server.security.Authorization': Bean
>>> definition is abstract
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at
>>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>>> ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at org.fcrepo.server.Server.init(Server.java:655)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> Error: Fatal error while starting server
>>>
>>> java.lang.RuntimeException: Fatal error while starting server
>>> at org.fcrepo.server.Server.init(Server.java:695)
>>> at
>>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
>>> Caused by: org.springframework.beans.factory.BeanIsAbstractException:
>>> Error creating bean with name 'org.fcrepo.server.security.Authorization':
>>> Bean definition is abstract
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>>> at
>>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>>> at
>>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>>> at org.fcrepo.server.Server.init(Server.java:655)
>>> ... 4 more
>>> ERROR (Server) Fatal error while starting server
>>> org.springframework.beans.factory.BeanIsAbstractException: Error
>>> creating bean with name 'org.fcrepo.server.security.Authorization': Bean
>>> definition is abstract
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at
>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at
>>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>>> ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at org.fcrepo.server.Server.init(Server.java:655)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> at
>>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:463)
>>> ~[fcrepo-server-3.6.2.jar:na]
>>> Server shutdown error: java.lang.RuntimeException: Fatal error while
>>> starting server
>>>
>>>
>>>
>>> ********************************************************************************
>>>
>>>
>>> ------------------------------------------------------------------------------
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>>>
>>
>
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