That was my attempt to change from legacy fs to akubra but then from your
comment it seems it was also a doomed path.
Anyway akubra will have to wait.
Thanks,
Javier
On 23 July 2013 04:14, Benjamin Armintor <[email protected]> wrote:
> Copying from my JIRA comments:
>
> "I don't think there are any messages broadcast on the indexing of a
> rebuild- you have to independently rebuild the instances. Given that, the
> easiest workaround for this problem is to comment out the
> ManagementDelegate configuration when running the Rebuilder. For 3.7, it
> should be easy to have the RebuildServer ignore the ManagementDelegate
> module (mark it as abstract, as it does the Management module)."
>
> Regards,
> Ben
>
>
>
> On Thu, Jul 18, 2013 at 1:50 PM, Benjamin Armintor <[email protected]>wrote:
>
>> Javier:
>> Could you please attach your .fcfg file for the server in error?
>>
>> Thanks,
>> Ben
>>
>>
>> On Thu, Jul 18, 2013 at 12:23 PM, Benjamin Armintor
>> <[email protected]>wrote:
>>
>>> Javier:
>>> Thanks for this report, too! I've stubbed out an issue to track this
>>> problem at https://jira.duraspace.org/browse/FCREPO-1194. We will try
>>> to confirm this one as well, and fix for 3.7 if necessary.
>>>
>>> - Ben
>>>
>>>
>>> On Wed, Jul 17, 2013 at 9:28 PM, Javier Molina <
>>> [email protected]> wrote:
>>>
>>>> Hi all,
>>>>
>>>> I am in the process to upgrade from Fedora 3.3.1 to 3.6.2
>>>>
>>>> I just noticed that after enabling journaling the fedora-rebuild.sh
>>>> script won't work anymore.
>>>>
>>>>
>>>> Basically in fedora.fcfg I added the relevant section for normal mode
>>>> as described here
>>>> https://wiki.duraspace.org/display/FEDORA36/Journaling#Journaling-impl-config
>>>>
>>>> When starting the fedora web applications everything looks fine but,
>>>> when stopping it and running fedora-rebuild.sh I get a Error creating
>>>> bean with name 'org.fcrepo.server.security.Authorization': Bean definition
>>>> is abstract.
>>>>
>>>>
>>>> This suggest to me that enabling journaling, introduces more spring
>>>> beans behind the scenes but I have not been able to figure out where or
>>>> how, enabling DEBUG logging for springframework in logback.xml shows that
>>>> it is loading beans from the standard locations in server/conf/spring but
>>>> it does not reveal much detail about the other locations where it is
>>>> loadging beans from.
>>>>
>>>> This is a snippet:
>>>>
>>>> ************************************************************************
>>>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.security.AuthorizationConfiguration$created#546ce79d]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.security.AuthorizationConfiguration$created#42dd8bec]
>>>> DEBUG (DefaultNamespaceHandlerResolver) Loaded NamespaceHandler
>>>> mappings: {
>>>> http://www.springframework.org/schema/task=org.springframework.scheduling.config.TaskNamespaceHandler,
>>>>
>>>> http://activemq.apache.org/schema/core=org.apache.xbean.spring.context.v2.XBeanNamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/p=org.springframework.beans.factory.xml.SimplePropertyNamespaceHandler,
>>>>
>>>> http://www.w3.org/2006/07/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/lang=org.springframework.scripting.config.LangNamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/util=org.springframework.beans.factory.xml.UtilNamespaceHandler,
>>>> http://cxf.apache.org/jaxws=org.apache.cxf.jaxws.spring.NamespaceHandler,
>>>>
>>>> http://cxf.apache.org/policy=org.apache.cxf.ws.policy.spring.NamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/jee=org.springframework.ejb.config.JeeNamespaceHandler,
>>>>
>>>> http://cxf.apache.org/transports/http/configuration=org.apache.cxf.transport.http.spring.NamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/tx=org.springframework.transaction.config.TxNamespaceHandler,
>>>>
>>>> http://cxf.apache.org/ws/addressing=org.apache.cxf.ws.addressing.spring.NamespaceHandler,
>>>>
>>>> http://cxf.apache.org/simple=org.apache.cxf.frontend.spring.NamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/aop=org.springframework.aop.config.AopNamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/context=org.springframework.context.config.ContextNamespaceHandler,
>>>> http://cxf.apache.org/core=org.apache.cxf.bus.spring.NamespaceHandler,
>>>> http://cxf.apache.org/jaxrs=org.apache.cxf.jaxrs.spring.NamespaceHandler,
>>>>
>>>> http://www.springframework.org/schema/security=org.springframework.security.config.SecurityNamespaceHandler,
>>>>
>>>> http://schemas.xmlsoap.org/ws/2004/09/policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>>>
>>>> http://www.w3.org/ns/ws-policy=org.apache.cxf.ws.policy.spring.PolicyNamespaceHandler,
>>>>
>>>> http://cxf.apache.org/bindings/soap=org.apache.cxf.binding.soap.spring.NamespaceHandler
>>>> }
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#245a690]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#2aba391a]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#27faefe0]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#4b9a6fa1]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#816d9ce]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#14356788]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#3e201c15]
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.config.Parameter#2e13c690]
>>>> DEBUG (BeanDefinitionParserDelegate) Using generated bean name
>>>> [util:list#14512f92] for nested custom element 'util:list'
>>>> DEBUG (BeanDefinitionParserDelegate) Neither XML 'id' nor 'name'
>>>> specified - using generated bean name
>>>> [org.fcrepo.server.security.impl.SimplePolicyLoader#4a5844db]
>>>> INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
>>>> [/opt/fedora/fedora-3.6/server/config/spring/doobjectvalidator.xml]
>>>> DEBUG (DefaultDocumentLoader) Using JAXP provider
>>>> [org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
>>>> DEBUG (PluggableSchemaResolver) Found XML schema [
>>>> http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
>>>> classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
>>>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>>>> DEBUG (BeanDefinitionParserDelegate) No XML 'id' specified - using
>>>> 'org.fcrepo.server.validation.DOObjectValidator' as bean name and [] as
>>>> aliases
>>>> INFO (XmlBeanDefinitionReader) Loading XML bean definitions from file
>>>> [/opt/fedora/fedora-3.6/server/config/spring/triple-generator.xml]
>>>> DEBUG (DefaultDocumentLoader) Using JAXP provider
>>>> [org.apache.xerces.jaxp.DocumentBuilderFactoryImpl]
>>>> DEBUG (PluggableSchemaResolver) Found XML schema [
>>>> http://www.springframework.org/schema/beans/spring-beans-3.0.xsd] in
>>>> classpath: org/springframework/beans/factory/xml/spring-beans-3.0.xsd
>>>> DEBUG (DefaultBeanDefinitionDocumentReader) Loading bean definitions
>>>> INFO (GenericApplicationContext) Refreshing
>>>> org.springframework.context.support.GenericApplicationContext@3e0d6c32:
>>>> startup date [Thu Jul 18 11:20:35 EST 2013]; parent:
>>>> org.springframework.context.support.GenericApplicationContext@42e50215
>>>> DEBUG (GenericApplicationContext) Bean factory for
>>>> org.springframework.context.support.GenericApplicationContext@3e0d6c32:
>>>> org.springframework.beans.factory.support.DefaultListableBeanFactory@50e68513:
>>>> defining beans
>>>> [org.springframework.context.annotation.CommonAnnotationBeanPostProcessor,org.fcrepo.server.security.ContextRegistry,org.fcrepo.server.security.Authorization,org.fcrepo.server.security.AuthorizationConfiguration,policyFinderModules,org.fcrepo.server.security.ContextAttributeFinderModule,org.fcrepo.server.security.ResourceAttributeFinderModule,attributeFinderModules,resourceFinderModules,PDPConfigurationFactory,LegacyPDPConfig,org.fcrepo.server.security.PolicyEnforcementPoint,org.fcrepo.server.validation.DOObjectValidator,org.trippi.io.TripleIteratorFactory,Object-3.0,ContentModel-3.0,ServiceDefinition-3.0,ServiceDeployment-3.0,org.fcrepo.server.resourceIndex.TripleGenerator,org.fcrepo.server.resourceIndex.ModelBasedTripleGenerator,localMySQLPool,localDerbyPool,localOraclePool,localPostgreSQLPool,localMulgaraTriplestore,localPostgresMPTTriplestore,apimUpdateMessages,apimAccessMessages,org.fcrepo.server.storage.lowlevel.ILowlevelStorage,org.fcrepo.server.storage.lowlevel.ILowlevelStorageConfiguration,org.fcrepo.server.security.BackendSecurity,org.fcrepo.server.security.BackendSecurityConfiguration,org.fcrepo.server.storage.DOManager,org.fcrepo.server.storage.DOManagerConfiguration,org.fcrepo.server.management.Management,org.fcrepo.server.management.ManagementConfiguration,org.fcrepo.server.management.ManagementDelegate,org.fcrepo.server.management.ManagementDelegateConfiguration,org.fcrepo.server.access.Access,org.fcrepo.server.access.AccessConfiguration,org.fcrepo.server.access.DynamicAccess,org.fcrepo.server.access.DynamicAccessConfiguration,org.fcrepo.server.search.FieldSearch,org.fcrepo.server.search.FieldSearchConfiguration,org.fcrepo.server.resourceIndex.ResourceIndex,org.fcrepo.server.resourceIndex.ResourceIndexConfiguration,org.fcrepo.oai.OAIProvider,org.fcrepo.oai.OAIProviderConfiguration,org.fcrepo.server.storage.translation.DOTranslator,org.fcrepo.server.storage.translation.DOTranslatorConfiguration,org.fcrepo.server.management.PIDGenerator,org.fcrepo.server.management.PIDGeneratorConfiguration,org.fcrepo.server.messaging.Messaging,org.fcrepo.server.messaging.MessagingConfiguration,org.fcrepo.server.storage.ConnectionPoolManager,org.fcrepo.server.storage.ConnectionPoolManagerConfiguration,org.fcrepo.server.validation.DOValidator,org.fcrepo.server.validation.DOValidatorConfiguration,org.fcrepo.server.storage.ExternalContentManager,org.fcrepo.server.storage.ExternalContentManagerConfiguration,org.trippi.TriplestoreConnector,org.fcrepo.server.resourceIndex.ResourceIndexRebuilder,org.fcrepo.server.utilities.rebuild.SQLRebuilder];
>>>> parent:
>>>> org.springframework.beans.factory.support.DefaultListableBeanFactory@7795c14c
>>>> DEBUG (DefaultListableBeanFactory) Creating shared instance of
>>>> singleton bean
>>>> 'org.springframework.context.annotation.CommonAnnotationBeanPostProcessor'
>>>>
>>>> ****************************************************
>>>>
>>>> And here below is the output when running fedora-rebuild.sh with the
>>>> default logback.xml config.
>>>>
>>>> Has anyone come across this? Any suggestion to fix it?
>>>>
>>>> Thanks,
>>>> Javier
>>>>
>>>>
>>>> ************************************************************
>>>> javier@genesis-cl:/opt/fedora/fedora-3.6/server/bin$
>>>> ./fedora-rebuild.sh
>>>>
>>>> Fedora Rebuild Utility
>>>> ..........................
>>>>
>>>> WARNING: Live rebuilds are not currently supported.
>>>> Make sure your server is stopped before continuing.
>>>>
>>>> Server directory is /opt/fedora/fedora-3.6/server
>>>>
>>>> ---------------------------------------------------------------------
>>>>
>>>> ERROR (Server) Fatal error while starting server
>>>> org.springframework.beans.factory.BeanIsAbstractException: Error
>>>> creating bean with name 'org.fcrepo.server.security.Authorization': Bean
>>>> definition is abstract
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at
>>>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>>>> ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at org.fcrepo.server.Server.init(Server.java:655)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> Error: Fatal error while starting server
>>>>
>>>> java.lang.RuntimeException: Fatal error while starting server
>>>> at org.fcrepo.server.Server.init(Server.java:695)
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.getRebuilder(Rebuild.java:268)
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:450)
>>>> Caused by: org.springframework.beans.factory.BeanIsAbstractException:
>>>> Error creating bean with name 'org.fcrepo.server.security.Authorization':
>>>> Bean definition is abstract
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>>>> at
>>>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>>>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>>>> at
>>>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>>>> at org.fcrepo.server.Server.init(Server.java:655)
>>>> ... 4 more
>>>> ERROR (Server) Fatal error while starting server
>>>> org.springframework.beans.factory.BeanIsAbstractException: Error
>>>> creating bean with name 'org.fcrepo.server.security.Authorization': Bean
>>>> definition is abstract
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.checkMergedBeanDefinition(AbstractBeanFactory.java:1208)
>>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
>>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at
>>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:196)
>>>> ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at
>>>> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1079)
>>>> ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE]
>>>> at org.fcrepo.server.Server.getBean(Server.java:1684)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.management.ManagementModule.postInitModule(ManagementModule.java:180)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at org.fcrepo.server.Server.init(Server.java:655)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.RebuildServer.getRebuildInstance(RebuildServer.java:164)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.getServer(Rebuild.java:206)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> at
>>>> org.fcrepo.server.utilities.rebuild.Rebuild.main(Rebuild.java:463)
>>>> ~[fcrepo-server-3.6.2.jar:na]
>>>> Server shutdown error: java.lang.RuntimeException: Fatal error while
>>>> starting server
>>>>
>>>>
>>>>
>>>> ********************************************************************************
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
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>>>>
>>>>
>>>
>>
>
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