Thanks ,but new errors coming .
I'm so sorry I'm so much trouble。 But I'm really so helpless with these errors.
Thanks!
----- 原始邮件 -----
发件人: "Johannes Ring" <[email protected]>
收件人: "盛华山" <[email protected]>
抄送: [email protected]
发送时间: 星期二, 2014年 1 月 07日 上午 12:23:00
主题: Re: [FEniCS-support] Install problem on macbook pro os 10.9
[Again: please Cc [email protected] in your replies]
Please see the following link for how to install this on OS X 10.9:
http://www.computersnyou.com/2025/2013/06/install-command-line-tools-in-osx-10-9-mavericks-how-to/
Johannes
On Mon, Jan 6, 2014 at 3:30 PM, 盛华山 <[email protected]> wrote:
> I have cut the picture of Downloads tab within the Xcode Preferences. But I'm
> not sure does the Pic2 mean that Xcode Command Line Tools have installed.
> Thanks!
>
> ----- 原始邮件 -----
> 发件人: "Johannes Ring" <[email protected]>
> 收件人: "盛华山" <[email protected]>
> 抄送: [email protected]
> 发送时间: 星期一, 2014年 1 月 06日 下午 10:04:32
> 主题: Re: [FEniCS-support] Install problem on macbook pro os 10.9
>
> On Mon, Jan 6, 2014 at 2:28 PM, 盛华山 <[email protected]> wrote:
>>
>> Thanks!
>> there is no /include/python 2.7 ,and even /include/ does not exist. Am I
>> missing some step when installing
>
> It looks like the Python framework was removed in OS X 10.9:
>
> https://developer.apple.com/library/mac/releasenotes/General/APIDiffsMacOSX10_9/index.html
>
> You said in your initial post that you have Xcode and "the command
> line tool seems installed by itself". Are you sure you have installed
> the Xcode Command Line Tools?
>
> Anyway, we do not currently have a binary package for OS X 10.9 and it
> is unlikely that the package for 10.8 will work on 10.9.
>
> Johannes
>
>> ----- 原始邮件 -----
>> 发件人: "Johannes Ring" <[email protected]>
>> 收件人: "盛华山" <[email protected]>
>> 抄送: [email protected]
>> 发送时间: 星期一, 2014年 1 月 06日 下午 9:14:28
>> 主题: Re: [FEniCS-support] Install problem on macbook pro os 10.9
>>
>> [Please keep fenics-support in Cc]
>>
>> In your compile.log I see this:
>>
>> [100%] Building CXX object
>> CMakeFiles/_d90675a333a0cf9426be4e77462853b0f4a37678.dir/d90675a333a0cf9426be4e77462853b0f4a37678PYTHON_wrap.cxx.o
>> /usr/bin/g++ -D_d90675a333a0cf9426be4e77462853b0f4a37678_EXPORTS
>> -fPIC -I/Applications/FEniCS.app/Contents/Resources/include
>> -I/usr/include/python2.7
>> -I/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpLKiUDP2014-1-6-16-16_instant/d90675a333a0cf9426be4e77462853b0f4a37678
>> -o
>> CMakeFiles/_d90675a333a0cf9426be4e77462853b0f4a37678.dir/d90675a333a0cf9426be4e77462853b0f4a37678PYTHON_wrap.cxx.o
>> -c
>> /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpLKiUDP2014-1-6-16-16_instant/d90675a333a0cf9426be4e77462853b0f4a37678/d90675a333a0cf9426be4e77462853b0f4a37678PYTHON_wrap.cxx
>> /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpLKiUDP2014-1-6-16-16_instant/d90675a333a0cf9426be4e77462853b0f4a37678/d90675a333a0cf9426be4e77462853b0f4a37678PYTHON_wrap.cxx:150:10:
>> fatal error: 'Python.h' file not found
>> #include <Python.h>
>> ^
>> 1 error generated.
>> make[2]: ***
>> [CMakeFiles/_d90675a333a0cf9426be4e77462853b0f4a37678.dir/d90675a333a0cf9426be4e77462853b0f4a37678PYTHON_wrap.cxx.o]
>> Error 1
>> make[1]: *** [CMakeFiles/_d90675a333a0cf9426be4e77462853b0f4a37678.dir/all]
>> Error 2
>> make: *** [all] Error 2
>>
>> The problem is that it cannot find Python.h, however, this file should
>> be in /usr/include/python2.7, which is included on the compile line
>> (-I/usr/include/python2.7). Can you verify that you have Python.h in
>> /usr/include/python2.7?
>>
>> Johannes
>>
>> [compile.log attached for reference]
>>
>> On Mon, Jan 6, 2014 at 1:11 PM, 盛华山 <[email protected]> wrote:
>>> Thanks so much!
>>>
>>> ----- 原始邮件 -----
>>> 发件人: "Johannes Ring" <[email protected]>
>>> 收件人: "盛华山" <[email protected]>
>>> 抄送: [email protected]
>>> 发送时间: 星期一, 2014年 1 月 06日 下午 8:05:20
>>> 主题: Re: [FEniCS-support] Install problem on macbook pro os 10.9
>>>
>>> On Mon, Jan 6, 2014 at 12:53 PM, 盛华山 <[email protected]> wrote:
>>>> Hi
>>>> Thanks for helping me.
>>>> When I test demo_poisson.py (python demo_poisson.py) in Terminal, there
>>>> are some errors.
>>>>
>>>> I have installed :
>>>>
>>>> Xcode (the command line tool seems installed by itself) ;
>>>>
>>>> Xquartz(the connection of X11 on Download webside ?);
>>>>
>>>> sudo xcodebuild -license also done
>>>>
>>>> but still some errors: the message are
>>>>
>>>> Calling FFC just-in-time (JIT) compiler, this may take some time.
>>>> In instant.recompile: The module did not compile with command 'make
>>>> VERBOSE=1 ', see
>>>> '/Users/HSSheng/.instant/error/d90675a333a0cf9426be4e77462853b0f4a37678/compile.log'
>>>> Traceback (most recent call last):
>>>> File "demo_poisson.py", line 41, in
>>>> V = FunctionSpace(mesh, "Lagrange", 1)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/functions/functionspace.py",
>>>> line 390, in init
>>>> FunctionSpaceBase.init(self, mesh, element, constrained_domain)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/functions/functionspace.py",
>>>> line 84, in init
>>>> ufc_element, ufc_dofmap = jit(self._ufl_element)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/compilemodules/jit.py",
>>>> line 66, in mpi_jit
>>>> return local_jit(*args, **kwargs)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/compilemodules/jit.py",
>>>> line 154, in jit
>>>> return jit_compile(form, parameters=p, common_cell=common_cell)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/ffc/jitcompiler.py",
>>>> line 75, in jit
>>>> return jit_element(ufl_object, parameters)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/ffc/jitcompiler.py",
>>>> line 244, in jit_element
>>>> compiled_form, module, form_data, prefix = jit_form(form, parameters)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/ffc/jitcompiler.py",
>>>> line 212, in jit_form
>>>> cache_dir = cache_dir)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/ufc_utils/build.py",
>>>> line 64, in build_ufc_module
>>>> **kwargs)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/instant/build.py",
>>>> line 541, in build_module
>>>> recompile(modulename, module_path, new_compilation_checksum, build_system)
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/instant/build.py",
>>>> line 150, in recompile
>>>> instant_error(msg % (cmd, compile_log_filename_dest))
>>>> File
>>>> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/instant/output.py",
>>>> line 49, in instant_error
>>>> raise RuntimeError(text)
>>>> RuntimeError: In instant.recompile: The module did not compile with
>>>> command 'make VERBOSE=1 ', see
>>>> '/Users/HSSheng/.instant/error/d90675a333a0cf9426be4e77462853b0f4a37678/compile.log'
>>>
>>> Please attach the compile.log file.
>>>
>>> Johannes
-- The C compiler identification is Clang 5.0.0
-- The CXX compiler identification is Clang 5.0.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found SWIG: /Applications/FEniCS.app/Contents/Resources/bin/swig (found version "2.0.8")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DEBUG
-- Build files have been written to: /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210
/Applications/FEniCS.app/Contents/Resources/bin/cmake -H/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 -B/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 --check-build-system CMakeFiles/Makefile.cmake 0
/Applications/FEniCS.app/Contents/Resources/bin/cmake -E cmake_progress_start /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles/progress.marks
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/build.make CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/depend
/Applications/FEniCS.app/Contents/Resources/bin/cmake -E cmake_progress_report /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles 1
[ 50%] Swig source
/Applications/FEniCS.app/Contents/Resources/bin/cmake -E make_directory /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210
/Applications/FEniCS.app/Contents/Resources/bin/swig -python -module dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 -shadow -modern -modernargs -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone -DDOLFIN_VERSION="1.2.0" -DBOOST_UBLAS_NDEBUG -DHAS_HDF5 -DHAS_TRILINOS -DHAS_SLEPC -DHAS_PETSC -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_CGAL -DHAS_ZLIB -DHAS_MPI -DHAS_VTK -outdir /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 -c++ -I/Applications/FEniCS.app/Contents/Resources/include -I/usr/include/libxml2 -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse -I/Applications/FEniCS.app/Contents/Resources/include -I/usr/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/lib/cmake/Trilinos/../../../include/trilinos -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include/trilinos -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse -I/usr/X11R6/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include -I/Applications/FEniCS.app/Contents/Resources/include/vtk-5.10 -I/usr/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 -o /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i
/Applications/FEniCS.app/Contents/Resources/include/dolfin/la/LinearAlgebraObject.h:36: Warning 520: Derived class 'LinearAlgebraObject' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:65: Warning 402: Base class 'Hierarchical< Function >' is incomplete.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/swig/function/pre.i:103: Warning 402: Only forward declaration 'Hierarchical< Function >' was found.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:67: Warning 520: Derived class 'Function' of 'dolfin::GenericFunction' is not similarly marked as a smart pointer.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:67: Warning 520: Derived class 'Function' of 'ufc::function' is not similarly marked as a smart pointer.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:67: Warning 520: Derived class 'Function' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/function/FunctionSpace.h:55: Warning 402: Base class 'Hierarchical< FunctionSpace >' is incomplete.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/swig/function/pre.i:102: Warning 402: Only forward declaration 'Hierarchical< FunctionSpace >' was found.
/Applications/FEniCS.app/Contents/Resources/include/dolfin/function/FunctionSpace.h:56: Warning 520: Derived class 'FunctionSpace' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:158: Warning 315: Nothing known about 'std::cos'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:159: Warning 315: Nothing known about 'std::sin'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:160: Warning 315: Nothing known about 'std::tan'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:161: Warning 315: Nothing known about 'std::acos'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:162: Warning 315: Nothing known about 'std::asin'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:163: Warning 315: Nothing known about 'std::atan'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:164: Warning 315: Nothing known about 'std::atan2'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:165: Warning 315: Nothing known about 'std::cosh'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:166: Warning 315: Nothing known about 'std::sinh'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:167: Warning 315: Nothing known about 'std::tanh'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:168: Warning 315: Nothing known about 'std::exp'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:169: Warning 315: Nothing known about 'std::frexp'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:170: Warning 315: Nothing known about 'std::ldexp'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:171: Warning 315: Nothing known about 'std::log'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:172: Warning 315: Nothing known about 'std::log10'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:173: Warning 315: Nothing known about 'std::modf'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:174: Warning 315: Nothing known about 'std::pow'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:175: Warning 315: Nothing known about 'std::sqrt'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:176: Warning 315: Nothing known about 'std::ceil'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:177: Warning 315: Nothing known about 'std::fabs'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:178: Warning 315: Nothing known about 'std::floor'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:179: Warning 315: Nothing known about 'std::fmod'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:180: Warning 315: Nothing known about 'std::max'.
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.i:181: Warning 315: Nothing known about 'std::min'.
cd /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 && /Applications/FEniCS.app/Contents/Resources/bin/cmake -E cmake_depends "Unix Makefiles" /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/DependInfo.cmake --color=
Dependee "/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/DependInfo.cmake" is newer than depender "/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/depend.internal".
Dependee "/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/depend.internal".
Scanning dependencies of target _dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/build.make CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/build
/Applications/FEniCS.app/Contents/Resources/bin/cmake -E cmake_progress_report /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/CMakeFiles 2
[100%] Building CXX object CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx.o
/usr/bin/g++ -D_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210_EXPORTS -DDOLFIN_VERSION=\"1.2.0\" -DBOOST_UBLAS_NDEBUG -DHAS_HDF5 -DHAS_TRILINOS -DHAS_SLEPC -DHAS_PETSC -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_CGAL -DHAS_ZLIB -DHAS_MPI -DHAS_VTK -DMPICH_IGNORE_CXX_SEEK -Wno-deprecated -fPIC -I/Applications/FEniCS.app/Contents/Resources/include -I/usr/include/libxml2 -I/Applications/FEniCS.app/Contents/Resources -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse -I/Applications/FEniCS.app/Contents/Resources/lib/cmake/Trilinos/../../../include/trilinos -I/Applications/FEniCS.app/Contents/Resources/include/trilinos -I/usr/X11R6/include -I/Applications/FEniCS.app/Contents/Resources/include/vtk-5.10 -I/usr/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210 -o CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx.o -c /private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx
/private/var/folders/fl/qv13001n0050ptwf_vc5g8680000gn/T/tmpgO2ib92014-1-7-01-08_instant/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx:3862:3: warning: expression result unused; should this cast be to 'void'? [-Wunused-value]
(void *)clientdata;
^ ~
1 warning generated.
Linking CXX shared module _dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.so
/Applications/FEniCS.app/Contents/Resources/bin/cmake -E cmake_link_script CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/link.txt --verbose=1
/usr/bin/g++ -DMPICH_IGNORE_CXX_SEEK -Wno-deprecated -bundle -Wl,-headerpad_max_install_names -o _dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.so CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx.o /Applications/FEniCS.app/Contents/Resources/lib/libdolfin.dylib /usr/lib/libxml2.dylib /Applications/FEniCS.app/Contents/Resources/lib/libarmadillo.dylib -framework Accelerate -framework Accelerate -framework Accelerate /Applications/FEniCS.app/Contents/Resources/lib/libboost_filesystem.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_program_options.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_system.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_thread.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_iostreams.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_mpi.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_serialization.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_timer.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_chrono.dylib /Applications/FEniCS.app/Contents/Resources/lib/libhdf5.dylib /usr/lib/libpthread.dylib /usr/lib/libz.dylib /usr/lib/libm.dylib /Applications/FEniCS.app/Contents/Resources/lib/libml.dylib /Applications/FEniCS.app/Contents/Resources/lib/libgaleri-xpetra.dylib /Applications/FEniCS.app/Contents/Resources/lib/libgaleri.dylib /Applications/FEniCS.app/Contents/Resources/lib/libisorropia.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpetraext.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpetrainout.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpetra.dylib /Applications/FEniCS.app/Contents/Resources/lib/libzoltan.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkosdisttsqr.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkosnodetsqr.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkoslinalg.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkosnodeapi.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkos.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpi.dylib /Applications/FEniCS.app/Contents/Resources/lib/libifpack.dylib /Applications/FEniCS.app/Contents/Resources/lib/libaztecoo.dylib /Applications/FEniCS.app/Contents/Resources/lib/libamesos.dylib /Applications/FEniCS.app/Contents/Resources/lib/libepetraext.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtriutils.dylib /Applications/FEniCS.app/Contents/Resources/lib/libepetra.dylib /Applications/FEniCS.app/Contents/Resources/lib/libteuchos.dylib /Applications/FEniCS.app/Contents/Resources/lib/libslepc.dylib /Applications/FEniCS.app/Contents/Resources/lib/libpetsc.dylib /Applications/FEniCS.app/Contents/Resources/lib/libumfpack.a /Applications/FEniCS.app/Contents/Resources/lib/libamd.a -framework Accelerate /Applications/FEniCS.app/Contents/Resources/lib/libcholmod.a /Applications/FEniCS.app/Contents/Resources/lib/libamd.a /Applications/FEniCS.app/Contents/Resources/lib/libcamd.a /Applications/FEniCS.app/Contents/Resources/lib/libcolamd.a /Applications/FEniCS.app/Contents/Resources/lib/libccolamd.a -framework Accelerate -framework Accelerate -framework Accelerate /Applications/FEniCS.app/Contents/Resources/lib/libcholmod.a /Applications/FEniCS.app/Contents/Resources/lib/libamd.a /Applications/FEniCS.app/Contents/Resources/lib/libcamd.a /Applications/FEniCS.app/Contents/Resources/lib/libcolamd.a /Applications/FEniCS.app/Contents/Resources/lib/libccolamd.a -framework Accelerate -framework Accelerate -framework Accelerate /Applications/FEniCS.app/Contents/Resources/lib/libptscotch.a /Applications/FEniCS.app/Contents/Resources/lib/libptscotcherr.a /Applications/FEniCS.app/Contents/Resources/lib/libCGAL.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_thread.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_system.dylib /Applications/FEniCS.app/Contents/Resources/lib/libgmp.dylib /Applications/FEniCS.app/Contents/Resources/lib/libmpfr.dylib /usr/lib/libz.dylib /Applications/FEniCS.app/Contents/Resources/lib/libmpi_cxx.dylib /Applications/FEniCS.app/Contents/Resources/lib/libmpi.dylib /usr/lib/libm.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkCommon.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkFiltering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkImaging.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkGraphics.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkGenericFiltering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkIO.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkRendering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkVolumeRendering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkHybrid.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkWidgets.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkInfovis.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkGeovis.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkViews.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkCharts.dylib /usr/lib/libpython2.7.dylib -framework Accelerate /Applications/FEniCS.app/Contents/Resources/lib/libboost_filesystem.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_program_options.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_system.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_thread.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_iostreams.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_mpi.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_serialization.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_timer.dylib /Applications/FEniCS.app/Contents/Resources/lib/libboost_chrono.dylib /Applications/FEniCS.app/Contents/Resources/lib/libhdf5.dylib /usr/lib/libpthread.dylib /usr/lib/libz.dylib /Applications/FEniCS.app/Contents/Resources/lib/libml.dylib /Applications/FEniCS.app/Contents/Resources/lib/libgaleri-xpetra.dylib /Applications/FEniCS.app/Contents/Resources/lib/libgaleri.dylib /Applications/FEniCS.app/Contents/Resources/lib/libisorropia.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpetraext.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpetrainout.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpetra.dylib /Applications/FEniCS.app/Contents/Resources/lib/libzoltan.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkosdisttsqr.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkosnodetsqr.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkoslinalg.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkosnodeapi.dylib /Applications/FEniCS.app/Contents/Resources/lib/libkokkos.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtpi.dylib /Applications/FEniCS.app/Contents/Resources/lib/libifpack.dylib /Applications/FEniCS.app/Contents/Resources/lib/libaztecoo.dylib /Applications/FEniCS.app/Contents/Resources/lib/libamesos.dylib /Applications/FEniCS.app/Contents/Resources/lib/libepetraext.dylib /Applications/FEniCS.app/Contents/Resources/lib/libtriutils.dylib /Applications/FEniCS.app/Contents/Resources/lib/libepetra.dylib /Applications/FEniCS.app/Contents/Resources/lib/libteuchos.dylib /Applications/FEniCS.app/Contents/Resources/lib/libslepc.dylib /Applications/FEniCS.app/Contents/Resources/lib/libpetsc.dylib /Applications/FEniCS.app/Contents/Resources/lib/libumfpack.a /Applications/FEniCS.app/Contents/Resources/lib/libamd.a /Applications/FEniCS.app/Contents/Resources/lib/libcholmod.a /Applications/FEniCS.app/Contents/Resources/lib/libcamd.a /Applications/FEniCS.app/Contents/Resources/lib/libcolamd.a /Applications/FEniCS.app/Contents/Resources/lib/libccolamd.a /Applications/FEniCS.app/Contents/Resources/lib/libptscotch.a /Applications/FEniCS.app/Contents/Resources/lib/libptscotcherr.a /Applications/FEniCS.app/Contents/Resources/lib/libCGAL.dylib /Applications/FEniCS.app/Contents/Resources/lib/libgmp.dylib /Applications/FEniCS.app/Contents/Resources/lib/libmpfr.dylib /Applications/FEniCS.app/Contents/Resources/lib/libmpi_cxx.dylib /Applications/FEniCS.app/Contents/Resources/lib/libmpi.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkCommon.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkFiltering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkImaging.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkGraphics.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkGenericFiltering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkIO.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkRendering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkVolumeRendering.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkHybrid.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkWidgets.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkInfovis.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkGeovis.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkViews.dylib /Applications/FEniCS.app/Contents/Resources/lib/vtk-5.10/libvtkCharts.dylib /usr/lib/libpython2.7.dylib
Undefined symbols for architecture x86_64:
"dolfin::Expression::compute_vertex_values(std::__1::vector<double, std::__1::allocator<double> >&, dolfin::Mesh const&) const", referenced from:
vtable for dolfin::Expression_700475d2d88a4982f3042522e5960bc2 in dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210PYTHON_wrap.cxx.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.so] Error 1
make[1]: *** [CMakeFiles/_dolfin_compile_code_f6c3010fb014663578b3cbc5ec745210.dir/all] Error 2
make: *** [all] Error 2
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