I am trying to install FEniCS through Dorsal on Red Hat 6.
All the packages prior to dolfin have been successfully installed
(save Trillinos). Here is a list which pops up during the dolfin
installation :
-- The following optional packages were found:
-- -------------------------------------------
-- (OK) OPENMP
-- (OK) MPI
-- (OK) PETSC
-- (OK) SLEPC
-- (OK) UMFPACK
-- (OK) SCOTCH
-- (OK) PARMETIS
-- (OK) CGAL
-- (OK) ZLIB
-- (OK) PYTHON
-- (OK) HDF5
-- (OK) VTK
-- (OK) QT
--
-- The following optional packages were not found:
-- -----------------------------------------------
-- (**) PETSC4PY
-- (**) TAO
-- (**) TRILINOS
-- (**) CHOLMOD
-- (**) PASTIX
-- (**) SPHINX
--
-- QVTK not found, disabling QT for plotting
-- QT not found, or QT/VTK not enabled in DOLFIN. Not building
demo_plot-qt
-- Disabling generation of documentation because Sphinx is missing.
-- Configuring done
And the error message :
In file included from
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphOrdering.cpp:23:
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:51:2: warning:
#warning "Using deprecated BGL compressed sparse row graph interface --"
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:52:2: warning:
#warning "please see the documentation for the new interface and then"
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:53:2: warning:
#warning "#define BOOST_GRAPH_USE_NEW_CSR_INTERFACE before including"
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:54:2: warning:
#warning "<boost/graph/compressed_sparse_row_graph.hpp>"
In file included from
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphColoring.h:28,
from
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/GraphColoring.cpp:31:
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:51:2: warning:
#warning "Using deprecated BGL compressed sparse row graph interface --"
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:52:2: warning:
#warning "please see the documentation for the new interface and then"
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:53:2: warning:
#warning "#define BOOST_GRAPH_USE_NEW_CSR_INTERFACE before including"
/usr/include/boost/graph/compressed_sparse_row_graph.hpp:54:2: warning:
#warning "<boost/graph/compressed_sparse_row_graph.hpp>"
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphOrdering.cpp:
In static member function ‘static std::vector<long unsigned int,
std::allocator<long unsigned int> >
dolfin::BoostGraphOrdering::compute_cuthill_mckee(const
std::set<std::pair<long unsigned int, long unsigned int>,
std::less<std::pair<long unsigned int, long unsigned int> >,
std::allocator<std::pair<long unsigned int, long unsigned int> > >&,
size_t, bool)’:
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphOrdering.cpp:87:
error: ‘edges_are_unsorted_multi_pass’ is not a member of ‘boost’
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphOrdering.cpp:
In static member function ‘static T
dolfin::BoostGraphOrdering::build_csr_directed_graph(const X&)’:
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphOrdering.cpp:192:
error: ‘edges_are_unsorted_multi_pass’ is not a member of ‘boost’
In file included from
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/GraphColoring.cpp:31:
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphColoring.h:
In static member function ‘static size_t
dolfin::BoostGraphColoring::compute_local_vertex_coloring(const
dolfin::Graph&, std::vector<T, std::allocator<_Tp1> >&)’:
/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dolfin/graph/BoostGraphColoring.h:79:
error: ‘edges_are_unsorted_multi_pass’ is not a member of ‘boost’
make[2]: ***
[dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o]
Error 1
make[2]: Leaving directory
`/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dorsal_build_dir'
make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2
make[1]: Leaving directory
`/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dorsal_build_dir'
make: *** [all] Error 2
make: Leaving directory
`/uio/hume/student-u29/imranal/Work/FEniCS/src/dolfin-1.3.0/dorsal_build_dir'
Failure with exit status: 2
Exit message: There was a problem building dolfin-1.3.0.
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