I checked the file CMakeList.txt at the line the build was crashing,
and the following is there :
# Check for PETSc, SLEPc, TAO and petsc4py
if (DOLFIN_ENABLE_PETSC)
find_package(PETSc 3.2)
if (PETSC_FOUND AND DOLFIN_ENABLE_SLEPC)
find_package(SLEPc 3.2)
endif()
if (PETSC_FOUND AND DOLFIN_ENABLE_TAO)
find_package(TAO)
endif()
if (PETSC_FOUND AND PYTHON_FOUND AND DOLFIN_ENABLE_PETSC4PY)
find_package(PETSc4py)
if (PETSC4PY_FOUND)
#line 335 : The if test below where the build crashes
if (NOT (${PETSC4PY_VERSION_MAJOR} EQUAL ${PETSC_VERSION_MAJOR}
AND ${PETSC4PY_VERSION_MINOR} EQUAL
${PETSC_VERSION_MINOR}))
message(WARNING "PETSc version ${PETSC_VERSION} and petsc4py
version ${PETSC4PY_VERSION} do not match. Disabling petsc4py support")
set(PETSC4PY_FOUND FALSE)
endif()
endif()
endif()
endif()
I checked my versions for petsc4py and petsc and they are respectively
:
3.4 and 3.4.4.
The error states :
CMake Error at CMakeLists.txt:335 (if):
if given arguments:
"NOT" "(" "3" "EQUAL" "AND" "4" "EQUAL" ")"
Unknown arguments specified
-- Configuring incomplete, errors occurred!
I can not make sense of this. Any one mind decrypting this for me ?
Imran
On 2014-05-12 14:26, Imran Ali wrote:
An update on this error :
I deleted the whole Work folder and tried to reinstall all packages
using the rhel6 platform, with following packages (with versions if
different then those set by default) :
PACKAGES=(
bzip2
git # 1.9.0
python # 2.7.6
openmpi # 1.8.1
boost # 1_55_0
cmake # 2.8.12.2
swig # 3.0.0
# libxml2 # 2.9.1 -> crashed /usr/bin/ld: cannot find -lpython2.7
pcre # 8.35
libffi # 3.0.13
glib2 # 2.40.0
vtk
gmp # 6.0.0
mpfr
cgal # 4.4
ply
blas
eigen
lapack # 3.5.0
ipython # 1.2.1
numpy # 1.8.1
cython # 0.20.1
mpi4py # 1.3.1
hdf5 # 1.8.12
h5py # 2.3.0
parmetis # 4.0.3
scientificpython
scipy # 0.14
scotch
petsc # 3.4.4
#trilinos #-> crashes can not find umfpack
petsc4py
skip:petsc # otherwise slepc install crashes
slepc # 3.4.4
fiat
ferari
ufc
ufl
ffc
instant
dolfin
)
I get the exact same error when the dolfin package is building.
Imran
11. mai 2014 kl. 12:52 skrev Imran Ali
<[email protected]>:
I am trying to install dolfin using dorsal (with
DOLFIN_SKIP_BUILD_TESTS:BOOL=ON) and get the following error :
¨Fetching dolfin-1.3.0
Verifying dolfin-1.3.0
dolfin-1.3.0.tar.gz: OK
Unpacking dolfin-1.3.0
Building dolfin-1.3.0
patching file demo/undocumented/plot-qt/cpp/CMakeLists.txt
Reversed (or previously applied) patch detected! Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file
demo/undocumented/plot-qt/cpp/CMakeLists.txt.rej
patching file dolfin/CMakeLists.txt
Reversed (or previously applied) patch detected! Skipping patch.
2 out of 2 hunks ignored -- saving rejects to file
dolfin/CMakeLists.txt.rej
fatal: Not a git repository (or any parent up to mount point
/mn/anatu/studenter-u1)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not
set).
-- Performing Test HAVE_PIPE
-- Performing Test HAVE_PIPE - Success
-- Performing Test HAVE_PEDANTIC
-- Performing Test HAVE_PEDANTIC - Success
-- Performing Test HAVE_STD
-- Performing Test HAVE_STD - Success
-- Performing Test HAVE_DEBUG
-- Performing Test HAVE_DEBUG - Success
-- Performing Test HAVE_O2_OPTIMISATION
-- Performing Test HAVE_O2_OPTIMISATION - Success
-- Found MPI_C:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so
-- Found MPI_CXX:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_cxx.so;/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so
-- Found MPI_Fortran:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_usempi.so;/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_mpifh.so;/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Performing Test OPENMP_UINT_TEST_RUNS
-- Performing Test OPENMP_UINT_TEST_RUNS - Success
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- filesystem
-- program_options
-- system
-- thread
-- iostreams
-- mpi
-- serialization
-- timer
-- chrono
-- UFC version: 2.3.0
-- Found Eigen3:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/include/eigen3 (Required is
at least version "3.0.0")
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.7.6")
-- Found PythonInterp:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/python (found suitable
version "2.7.6", minimum required is "2")
-- NumPy header version 1.8.1 found
-- Found SWIG: /mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/swig
(found version "3.0.0")
-- Checking for package 'PETSc'
-- PETSC_DIR is /mn/anatu/studenter-u1/imranal/Work/FEniCS
-- PETSC_ARCH is empty
-- Found petscconf.h
-- Found PETSc:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libpetsc.so (Required
is at least version "3.2")
-- Checking for package 'SLEPc'
-- SLEPC_DIR is /mn/anatu/studenter-u1/imranal/Work/FEniCS
-- Found SLEPc:
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libslepc.so (Required
is at least version "3.2")
-- Checking for package 'TAO'
-- TAO_DIR is TAO_DIR-NOTFOUND
-- TAO could not be found. Be sure to set TAO_DIR, PETSC_DIR, and
PETSC_ARCH. (missing: TAO_LIBRARIES TAO_DIR TAO_INCLUDE_DIRS)
-- Checking for package 'PETSc4Py'
-- petsc4py version 3.4 found
CMake Error at CMakeLists.txt:335 (if):
if given arguments:
"NOT" "(" "3" "EQUAL" "AND" "4" "EQUAL" ")"
Unknown arguments specified
-- Configuring incomplete, errors occurred!
See also
"/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/dorsal_build_dir/CMakeFiles/CMakeOutput.log".
Failure with exit status: 1
Exit message: There was a problem configuring dolfin-1.3.0.
I have attached my CMakeOutput.log.
I had managed to successfully build dolfin. However, I encountered an
error when importing dolfin (ImportError: No module named common).
Apparently dolfin was installed in Work/lib64/python2.6/site-packages
and not Work/lib/python2.7/site-packages . So deleted
Work/lib64/python2.6 and reinstalled all fenics packages. And now this
error occurs.
Imran
Imran
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