On Mon, May 12, 2014 at 3:27 PM, Imran Ali
<[email protected]> wrote:
> I checked the file CMakeList.txt at the line the build was crashing, and the
> following is there :
>
> # Check for PETSc, SLEPc, TAO and petsc4py
> if (DOLFIN_ENABLE_PETSC)
> find_package(PETSc 3.2)
> if (PETSC_FOUND AND DOLFIN_ENABLE_SLEPC)
> find_package(SLEPc 3.2)
> endif()
> if (PETSC_FOUND AND DOLFIN_ENABLE_TAO)
> find_package(TAO)
> endif()
> if (PETSC_FOUND AND PYTHON_FOUND AND DOLFIN_ENABLE_PETSC4PY)
> find_package(PETSc4py)
> if (PETSC4PY_FOUND)
> #line 335 : The if test below where the build crashes
Try changing these two lines:
> if (NOT (${PETSC4PY_VERSION_MAJOR} EQUAL ${PETSC_VERSION_MAJOR}
> AND ${PETSC4PY_VERSION_MINOR} EQUAL ${PETSC_VERSION_MINOR}))
into this:
if (NOT ("${PETSC4PY_VERSION_MAJOR}" EQUAL "${PETSC_VERSION_MAJOR}"
AND "${PETSC4PY_VERSION_MINOR}" EQUAL "${PETSC_VERSION_MINOR}"))
That is, add quotes around the version numbers.
Johannes
> message(WARNING "PETSc version ${PETSC_VERSION} and petsc4py version
> ${PETSC4PY_VERSION} do not match. Disabling petsc4py support")
> set(PETSC4PY_FOUND FALSE)
> endif()
> endif()
> endif()
> endif()
>
> I checked my versions for petsc4py and petsc and they are respectively :
>
> 3.4 and 3.4.4.
>
> The error states :
>
>
> CMake Error at CMakeLists.txt:335 (if):
> if given arguments:
>
> "NOT" "(" "3" "EQUAL" "AND" "4" "EQUAL" ")"
>
> Unknown arguments specified
>
>
> -- Configuring incomplete, errors occurred!
>
> I can not make sense of this. Any one mind decrypting this for me ?
>
> Imran
>
>
> On 2014-05-12 14:26, Imran Ali wrote:
>>
>> An update on this error :
>>
>> I deleted the whole Work folder and tried to reinstall all packages
>> using the rhel6 platform, with following packages (with versions if
>> different then those set by default) :
>>
>> PACKAGES=(
>> bzip2
>> git # 1.9.0
>> python # 2.7.6
>> openmpi # 1.8.1
>> boost # 1_55_0
>> cmake # 2.8.12.2
>> swig # 3.0.0
>> # libxml2 # 2.9.1 -> crashed /usr/bin/ld: cannot find -lpython2.7
>> pcre # 8.35
>> libffi # 3.0.13
>> glib2 # 2.40.0
>> vtk
>> gmp # 6.0.0
>> mpfr
>> cgal # 4.4
>> ply
>> blas
>> eigen
>> lapack # 3.5.0
>> ipython # 1.2.1
>> numpy # 1.8.1
>> cython # 0.20.1
>> mpi4py # 1.3.1
>> hdf5 # 1.8.12
>> h5py # 2.3.0
>> parmetis # 4.0.3
>> scientificpython
>> scipy # 0.14
>> scotch
>> petsc # 3.4.4
>> #trilinos #-> crashes can not find umfpack
>> petsc4py
>> skip:petsc # otherwise slepc install crashes
>> slepc # 3.4.4
>> fiat
>> ferari
>> ufc
>> ufl
>> ffc
>> instant
>> dolfin
>> )
>>
>> I get the exact same error when the dolfin package is building.
>>
>> Imran
>>
>> 11. mai 2014 kl. 12:52 skrev Imran Ali <[email protected]>:
>>
>>> I am trying to install dolfin using dorsal (with
>>> DOLFIN_SKIP_BUILD_TESTS:BOOL=ON) and get the following error :
>>>
>>> ¨Fetching dolfin-1.3.0
>>> Verifying dolfin-1.3.0
>>> dolfin-1.3.0.tar.gz: OK
>>> Unpacking dolfin-1.3.0
>>> Building dolfin-1.3.0
>>> patching file demo/undocumented/plot-qt/cpp/CMakeLists.txt
>>> Reversed (or previously applied) patch detected! Skipping patch.
>>> 1 out of 1 hunk ignored -- saving rejects to file
>>> demo/undocumented/plot-qt/cpp/CMakeLists.txt.rej
>>> patching file dolfin/CMakeLists.txt
>>> Reversed (or previously applied) patch detected! Skipping patch.
>>> 2 out of 2 hunks ignored -- saving rejects to file
>>> dolfin/CMakeLists.txt.rej
>>> fatal: Not a git repository (or any parent up to mount point
>>> /mn/anatu/studenter-u1)
>>> Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not
>>> set).
>>> -- Performing Test HAVE_PIPE
>>> -- Performing Test HAVE_PIPE - Success
>>> -- Performing Test HAVE_PEDANTIC
>>> -- Performing Test HAVE_PEDANTIC - Success
>>> -- Performing Test HAVE_STD
>>> -- Performing Test HAVE_STD - Success
>>> -- Performing Test HAVE_DEBUG
>>> -- Performing Test HAVE_DEBUG - Success
>>> -- Performing Test HAVE_O2_OPTIMISATION
>>> -- Performing Test HAVE_O2_OPTIMISATION - Success
>>> -- Found MPI_C: /mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so
>>> -- Found MPI_CXX:
>>> /mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_cxx.so;/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so
>>> -- Found MPI_Fortran:
>>> /mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_usempi.so;/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_mpifh.so;/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so
>>> -- Try OpenMP C flag = [-fopenmp]
>>> -- Performing Test OpenMP_FLAG_DETECTED
>>> -- Performing Test OpenMP_FLAG_DETECTED - Success
>>> -- Try OpenMP CXX flag = [-fopenmp]
>>> -- Performing Test OpenMP_FLAG_DETECTED
>>> -- Performing Test OpenMP_FLAG_DETECTED - Success
>>> -- Found OpenMP: -fopenmp
>>> -- Performing Test OPENMP_UINT_TEST_RUNS
>>> -- Performing Test OPENMP_UINT_TEST_RUNS - Success
>>> -- Boost version: 1.55.0
>>> -- Found the following Boost libraries:
>>> -- filesystem
>>> -- program_options
>>> -- system
>>> -- thread
>>> -- iostreams
>>> -- mpi
>>> -- serialization
>>> -- timer
>>> -- chrono
>>> -- UFC version: 2.3.0
>>> -- Found Eigen3:
>>> /mn/anatu/studenter-u1/imranal/Work/FEniCS/include/eigen3 (Required is at
>>> least version "3.0.0")
>>> -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.7.6")
>>> -- Found PythonInterp:
>>> /mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/python (found suitable
>>> version "2.7.6", minimum required is "2")
>>> -- NumPy header version 1.8.1 found
>>> -- Found SWIG: /mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/swig (found
>>> version "3.0.0")
>>> -- Checking for package 'PETSc'
>>> -- PETSC_DIR is /mn/anatu/studenter-u1/imranal/Work/FEniCS
>>> -- PETSC_ARCH is empty
>>> -- Found petscconf.h
>>> -- Found PETSc:
>>> /mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libpetsc.so (Required is at
>>> least version "3.2")
>>> -- Checking for package 'SLEPc'
>>> -- SLEPC_DIR is /mn/anatu/studenter-u1/imranal/Work/FEniCS
>>> -- Found SLEPc:
>>> /mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libslepc.so (Required is at
>>> least version "3.2")
>>> -- Checking for package 'TAO'
>>> -- TAO_DIR is TAO_DIR-NOTFOUND
>>> -- TAO could not be found. Be sure to set TAO_DIR, PETSC_DIR, and
>>> PETSC_ARCH. (missing: TAO_LIBRARIES TAO_DIR TAO_INCLUDE_DIRS)
>>> -- Checking for package 'PETSc4Py'
>>> -- petsc4py version 3.4 found
>>> CMake Error at CMakeLists.txt:335 (if):
>>> if given arguments:
>>>
>>> "NOT" "(" "3" "EQUAL" "AND" "4" "EQUAL" ")"
>>>
>>> Unknown arguments specified
>>>
>>>
>>> -- Configuring incomplete, errors occurred!
>>> See also
>>> "/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/dorsal_build_dir/CMakeFiles/CMakeOutput.log".
>>> Failure with exit status: 1
>>> Exit message: There was a problem configuring dolfin-1.3.0.
>>>
>>>
>>> I have attached my CMakeOutput.log.
>>>
>>> I had managed to successfully build dolfin. However, I encountered an
>>> error when importing dolfin (ImportError: No module named common).
>>> Apparently dolfin was installed in Work/lib64/python2.6/site-packages and
>>> not Work/lib/python2.7/site-packages . So deleted Work/lib64/python2.6 and
>>> reinstalled all fenics packages. And now this error occurs.
>>>
>>> Imran
>>>
>>> Imran
>>> <CMakeOutput.log>_______________________________________________
>>> fenics-support mailing list
>>> [email protected]
>>> http://fenicsproject.org/mailman/listinfo/fenics-support
>>
>>
>> _______________________________________________
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>
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