14. mai 2014 kl. 08:03 skrev Johannes Ring <[email protected]>:
> On Tue, May 13, 2014 at 4:36 PM, Imran Ali
> <[email protected]> wrote:
>> I have tried to run both the cpp and python documented poisson demo, but I
>> get the same error.
>>
>> Work/FEniCS/lib/libdolfin.so: Undefined reference to ’SCOTCH_randomReset’
>
> This should be defined in libscotch.a:
>
> $ nm Work/FEniCS/lib/libscotch.a | grep SCOTCH_randomReset
> 0000000000000000 T SCOTCH_randomReset
> U SCOTCH_randomReset
I get a slightly different output then you :
0000000000000010 T SCOTCH_randomReset
U SCOTCH_randomReset
Notice the 1 and the second last digit.
>
> Does it link to libscotch.a when you build the C++ demo? Try "make
> VERBOSE=1" to see which libraries it links to.
I ran make with VERBOSE = 1 and got the following output :
$ make VERBOSE=1
/mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/cmake
-H/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
-B/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
--check-build-system CMakeFiles/Makefile.cmake 0
/mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/cmake -E cmake_progress_start
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp/CMakeFiles
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory
`/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp'
make -f CMakeFiles/demo_poisson.dir/build.make
CMakeFiles/demo_poisson.dir/depend
make[2]: Entering directory
`/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp'
cd
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
&& /mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/cmake -E cmake_depends "Unix
Makefiles"
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp
/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/DependInfo.cmake
--color=
make[2]: Leaving directory
`/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp'
make -f CMakeFiles/demo_poisson.dir/build.make CMakeFiles/demo_poisson.dir/build
make[2]: Entering directory
`/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp'
Linking CXX executable demo_poisson
/mn/anatu/studenter-u1/imranal/Work/FEniCS/bin/cmake -E cmake_link_script
CMakeFiles/demo_poisson.dir/link.txt --verbose=1
/usr/bin/c++ -O2 -g -DNDEBUG CMakeFiles/demo_poisson.dir/main.cpp.o -o
demo_poisson -rdynamic
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so -lxml2
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_filesystem.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_program_options.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_system.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_thread.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_iostreams.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_mpi.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_serialization.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_timer.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_chrono.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libhdf5.so -lz -lm
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libslepc.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libpetsc.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libumfpack.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libamd.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libblas.a -lgfortran
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libptscotch.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libptesmumps.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libptscotcherr.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libparmetis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmetis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libCGAL.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_thread.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_system.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libgmp.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpfr.so -lz
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_cxx.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so -lQtGui -lQtCore
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkCommon.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkFiltering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkImaging.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkGraphics.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkGenericFiltering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkIO.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkRendering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkVolumeRendering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkHybrid.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkWidgets.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkInfovis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkGeovis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkViews.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkCharts.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_system.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_thread.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_iostreams.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_mpi.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_serialization.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_timer.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libboost_chrono.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libhdf5.so -lm
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libslepc.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libpetsc.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libumfpack.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libamd.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libblas.a -lgfortran
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libptscotch.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libptesmumps.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libptscotcherr.a
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libparmetis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmetis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libCGAL.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libgmp.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpfr.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi_cxx.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so -lQtGui -lQtCore
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkCommon.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkFiltering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkImaging.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkGraphics.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkGenericFiltering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkIO.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkRendering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkVolumeRendering.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkHybrid.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkWidgets.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkInfovis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkGeovis.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkViews.so
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8/libvtkCharts.so
-Wl,-rpath,/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib:/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/vtk-5.8
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so: undefined
reference to `SCOTCH_randomReset'
collect2: ld returned 1 exit status
make[2]: *** [demo_poisson] Error 1
make[2]: Leaving directory
`/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp'
make[1]: *** [CMakeFiles/demo_poisson.dir/all] Error 2
make[1]: Leaving directory
`/mn/anatu/studenter-u1/imranal/Work/FEniCS/src/dolfin-1.3.0/demo/documented/poisson/cpp'
make: *** [all] Error 2
Imran
>
> Johannes
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