On 2014-05-21 15:23, Johannes Ring wrote:
On Wed, May 21, 2014 at 3:20 PM, Imran Ali
<[email protected]> wrote:
On 2014-05-21 13:52, Johannes Ring wrote:
On Wed, May 21, 2014 at 1:35 PM, Imran Ali
<[email protected]> wrote:
On 2014-05-20 15:16, Johannes Ring wrote:
On Tue, May 20, 2014 at 2:55 PM, Imran Ali
<[email protected]> wrote:
I commented out the following in the cmake file :
## Try to figure out PETSC_DIR by finding petsc.h
#find_path(PETSC_DIR include/petsc.h
# HINTS ${PETSC_DIR} $ENV{PETSC_DIR}
# PATHS ${petsc_dir_locations}
# DOC "PETSc directory")
message("Skipped find petsc")
# Report result of search for PETSC_DIR
if (DEFINED PETSC_DIR)
message(STATUS "PETSC_DIR is ${PETSC_DIR}")
else()
message(STATUS "PETSC_DIR is empty")
endif()
And the build went successfully, however without being able to
find
PETSc.
Which I need.
I was thinking more of disabling some of the try_run calls in
FindPETSc.cmake. However, you can also try to turn off
DOLFIN_SKIP_BUILD_TESTS and then apply the following patch to
FindPETSc.cmake:
# Build PETSc test program
-if (DOLFIN_SKIP_BUILD_TESTS)
+if (1)
set(PETSC_TEST_RUNS TRUE)
- set(PETSC_VERSION "UNKNOWN")
+ set(PETSC_VERSION "3.4.4")
set(PETSC_VERSION_OK TRUE)
elseif (FOUND_PETSC_CONF)
Change the version number according to your PETSc version.
Johannes
I added this in the PETSc cmake file (along with skip build in
dolfin
script), however the build would crash with the following message
CMake Error at CMakeLists.txt:335 (if):
if given arguments:
"NOT" "(" "3" "EQUAL" "AND" "4" "EQUAL" ")"
Unknown arguments specified
Haven't we already been through this?
http://fenicsproject.org/pipermail/fenics-support/2014-May/000552.html
Johannes
Thanks! That did it. The dolfin build went successfully.
Good. However, the original problem was that you couldn't run the
poisson demo. Does that work now?
Johannes
Hi and sorry for the delayed answer. I have reinstalled every thing
from beginning after removing the Work folder, and decided to go for
python2.6.
I ran the cpp demo, and get the following segmentation fault :
$ ./demo_poisson
[bell:14359] *** Process received signal ***
[bell:14359] Signal: Segmentation fault (11)
[bell:14359] Signal code: Address not mapped (1)
[bell:14359] Failing at address: 0x1
[bell:14359] [ 0] /lib64/libc.so.6[0x374fc329a0]
[bell:14359] [ 1] /lib64/libc.so.6(_IO_vfprintf+0x3e5c)[0x374fc4812c]
[bell:14359] [ 2] /lib64/libc.so.6(vasprintf+0xba)[0x374fc6f6da]
[bell:14359] [ 3] /lib64/libc.so.6(asprintf+0x88)[0x374fc4f648]
[bell:14359] [ 4]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so.1(ompi_mpi_init+0x306)[0x7f853c87b9b6]
[bell:14359] [ 5]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libmpi.so.1(MPI_Init_thread+0x184)[0x7f853c89f4e4]
[bell:14359] [ 6]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so.1.3(_ZN6dolfin17SubSystemsManager8init_mpiEiPPci+0x9e)[0x7f85455bdaee]
[bell:14359] [ 7]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so.1.3(_ZN6dolfin17SubSystemsManager8init_mpiEv+0x27)[0x7f85455bdcd7]
[bell:14359] [ 8]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so.1.3(_ZN6dolfin3MPI13num_processesEv+0x9)[0x7f85455bc5d9]
[bell:14359] [ 9]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so.1.3(_ZN6dolfin12MeshTopologyC1Ev+0xcf)[0x7f854573b41f]
[bell:14359] [10]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so.1.3(_ZN6dolfin4MeshC2Ev+0xfa)[0x7f85456feeba]
[bell:14359] [11]
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/libdolfin.so.1.3(_ZN6dolfin13RectangleMeshC2EddddmmSs+0x40)[0x7f854537e650]
[bell:14359] [12] ./demo_poisson(main+0x6c)[0x40921c]
[bell:14359] [13]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x374fc1ed1d]
[bell:14359] [14] ./demo_poisson[0x409059]
[bell:14359] *** End of error message ***
Segmentation fault (core dumped)
While running the python demo, nothing happens...it simply hangs :
$ python demo_poisson.py
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/python2.6/site-packages/numpy/oldnumeric/__init__.py:11:
ModuleDeprecationWarning: The oldnumeric module will be dropped in
Numpy 1.9
warnings.warn(_msg, ModuleDeprecationWarning)
Calling FFC just-in-time (JIT) compiler, this may take some time.
/mn/anatu/studenter-u1/imranal/Work/FEniCS/lib/python2.6/site-packages/numpy/linalg/linalg.py:520:
DeprecationWarning: Implicitly casting between incompatible kinds. In a
future numpy release, this will raise an error. Use casting="unsafe" if
this is intentional.
ainv = _umath_linalg.inv(a, signature=signature, extobj=extobj)
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
I tried some of the other cpp and python demos, and they all got stuck.
Imran
Imran
Using the if test if (DOLFIN_SKIP_BUILD_TESTS) instead of if(1),
would
result in no error. However, then the dolfin build would not find
PETSc :
-- Found petscconf.h
-- Performing test PETSC_TEST_RUNS - Failed
-- Performing test PETSC_TEST_3RD_PARTY_LIBS_RUNS - Failed
-- Performing Test PETSC_CUSP_FOUND
-- Performing Test PETSC_CUSP_FOUND - Failed
-- PETSc configured without Cusp support
-- PETSc could not be found. Be sure to set PETSC_DIR and
PETSC_ARCH.
(missing: PETSC_TEST_RUNS) (Required is at least version "3.2")
And the build would continue without PETSc.
Imran
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