Have you tried adding the location of where you installed SuiteSparse to CMAKE_PREFIX_PATH?
Johannes On Tue, Jul 1, 2014 at 10:20 AM, Sai Rajeshwar <rajsa...@gmail.com> wrote: > hi, > > according to the above error i installed umfpack and cholmod through > suisparse > > now when i do cmake for dolfin.. i got the following output > ------------------------------------------------------ > > > -- Looking for Fortran sgemm > -- Looking for Fortran sgemm - found > -- > > > > > > > > > > > > > * Checking for package 'UMFPACK'-- Checking for package 'AMD'-- Checking > for package 'CHOLMOD'-- Checking for package 'AMD'-- A library with BLAS > API found. -- Looking for Fortran cheev-- Looking for Fortran cheev - not > found-- Performing Test CHOLMOD_TEST_RUNS-- Performing Test > CHOLMOD_TEST_RUNS - Failed-- Performing Test UMFPACK_TEST_RUNS-- Performing > Test UMFPACK_TEST_RUNS - Failed -- Checking for package 'CHOLMOD'-- > Checking for package 'AMD'* > > -- A library with BLAS API found. > -- Could NOT find HDF5 (missing: HDF5 > > ------------------------------------- > did dolfin find umfpack and cholmod.. if so why the tests are failed and > finally it resulted in ----- > > the following... i installed umfpack cholmod > > > i have following > > login3$ ls > libamd.2.3.1.a libcholmod.a librbio.2.1.1.a > libamd.a libcolamd.2.8.0.a librbio.a > libbtf.1.2.0.a libcolamd.a libspqr.1.3.1.a > libbtf.a libcxsparse.3.1.1.a libspqr.a > libcamd.2.3.1.a libcxsparse.a libsuitesparseconfig.4.0.2.a > libcamd.a libklu.1.2.1.a libsuitesparseconfig.a > libccolamd.2.8.0.a libklu.a libumfpack.5.6.1.a > libccolamd.a libldl.2.1.0.a libumfpack.a > libcholmod.2.0.1.a libldl.a > > ------------------------------------------- > > > The following optional packages were found: > -- ------------------------------ > ------------- > -- (OK) OPENMP > -- (OK) MPI > -- (OK) CGAL > -- (OK) ZLIB > -- (OK) PYTHON > -- (OK) SPHINX > -- (OK) VTK > -- (OK) QT > -- > -- The following optional packages were not enabled: > -- ------------------------------------------------- > -- (--) SCOTCH > > -- > -- The following optional packages were not found: > -- ----------------------------------------------- > -- (**) PETSC > -- (**) PETSC4PY > -- (**) SLEPC > -- (**) TRILINOS > -- (**) UMFPACK > -- (**) CHOLMOD > -- (**) PASTIX > -- (**) PARMETIS > -- (**) HDF5 > > > help me out.. > > *with regards..* > > *M. Sai Rajeswar* > *M-tech Computer Technology* > > > *IIT Delhi----------------------------------Cogito Ergo Sum---------* > > > On Fri, Jun 27, 2014 at 6:51 PM, Sai Rajeshwar <rajsa...@gmail.com> wrote: > >> hi, >> >> Im tring to run cpp demos.. now this is all i have done.. making it >> explicit so that i want to kknow if every thing is allright.. >> >> ------------------------------------------------------------------------------------------------------------------------------------ >> >> login3$ mkdir build >> login3$ cd build/ >> login3$ cmake .. >> -- The C compiler identification is GNU 4.4.7 >> >> -- The CXX compiler identification is GNU 4.4.7 >> -- Check for working C compiler: /usr/bin/gcc >> -- Check for working C compiler: /usr/bin/gcc -- works >> -- Detecting C compiler ABI info >> -- Detecting C compiler ABI info - done >> -- Check for working CXX compiler: /usr/bin/c++ >> -- Check for working CXX compiler: /usr/bin/c++ -- works >> -- Detecting CXX compiler ABI info >> -- Detecting CXX compiler ABI info - done >> CMake Warning at CMakeLists.txt:18 (find_package): >> By not providing "FindDOLFIN.cmake" in CMAKE_MODULE_PATH this project >> has >> asked CMake to find a package configuration file provided by "DOLFIN", >> but >> CMake did not find one. >> >> Could not find a package configuration file provided by "DOLFIN" with >> any >> of the following names: >> >> DOLFINConfig.cmake >> dolfin-config.cmake >> >> Add the installation prefix of "DOLFIN" to CMAKE_PREFIX_PATH or set >> "DOLFIN_DIR" to a directory containing one of the above files. If >> "DOLFIN" >> provides a separate development package or SDK, be sure it has been >> installed. >> >> -- Configuring done >> -- Generating done >> -- Build files have been written to: /home1/03023 >> /rajeswar/share/dolfin/demo/documented/poisson/cpp/build >> >> >> ------------------------------------------------- >> because of that warning i did the following thing and ran 'make ' >> command incidentally make was successful >> ------------------cmake again for warnings------------------------------ >> >> ogin3$ export CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH:/home1/03023/rajeswar/ >> login3$ cmake .. >> -- Configuring done >> CMake Warning at CMakeLists.txt:37 (add_executable): >> >> Cannot generate a safe runtime search path for target demo_poisson >> because >> files in some directories may conflict with libraries in implicit >> directories: >> >> runtime library [libz.so.1] in /usr/lib64 may be hidden by files in: >> /home1/03023/rajeswar/lib >> >> Some of these libraries may not be found correctly. >> >> >> -- Generating done >> -- Build files have been written to: /home1/03023 >> /rajeswar/share/dolfin/demo/documented/poisson/cpp/build >> >> -------------------------------- >> make---------------------------------------------------------------------- >> >> >> >> login3$ make VERBOSE=1 >> /opt/apps/cmake/2.8.9/bin/cmake >> -H/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp >> -B/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build >> --check-build-system CMakeFiles/Makefile.cmake 0 >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_start >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles >> /home1/03023 >> /rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles/progress.marks >> make -f CMakeFiles/Makefile2 all >> make[1]: Entering directory `/home1/03023 >> /rajeswar/share/dolfin/demo/documented/poisson/cpp/build' >> make -f CMakeFiles/demo_poisson.dir/build.make >> CMakeFiles/demo_poisson.dir/depend >> make[2]: Entering directory `/home1/03023 >> /rajeswar/share/dolfin/demo/documented/poisson/cpp/build' >> cd /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build >> && /opt/apps/cmake/2.8.9/bin/cmake -E cmake_depends "Unix Makefiles" /home1/ >> 03023/rajeswar/share/dolfin/demo/documented/poisson/cpp >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles/demo_poisson.dir/DependInfo.cmake >> --color= >> Dependee >> "/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles/demo_poisson.dir/DependInfo.cmake" >> is newer than depender >> "/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles/demo_poisson.dir/depend.internal". >> Dependee >> "/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles/CMakeDirectoryInformation.cmake" >> is newer than depender >> "/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles/demo_poisson.dir/depend.internal". >> Scanning dependencies of target demo_poisson >> make[2]: Leaving directory >> `/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build' >> make -f CMakeFiles/demo_poisson.dir/build.make >> CMakeFiles/demo_poisson.dir/build >> make[2]: Entering directory >> `/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build' >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_report >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles >> 1 >> >> [100%] Building CXX object CMakeFiles/demo_poisson.dir/main.cpp.o >> /usr/bin/c++ -DDOLFIN_VERSION=\"1.4.0\" -DBOOST_UBLAS_NDEBUG >> -DDOLFIN_SIZE_T=8 -DHAS_CGAL -DHAS_ZLIB -DHAS_MPI -DHAS_OPENMP -DHAS_QT4 >> -DHAS_VTK -std=c++0x -Wno-deprecated -frounding-math >> -fno-strict-aliasing -fopenmp -O2 -g -isystem >> /home1/03023/rajeswar/include -isystem /usr/include/libxml2 -isystem >> /opt/apps/intel14/mvapich2/2.0b/include -isystem >> /home1/03023/rajeswar/include/eigen3 -isystem >> /home1/03023/rajeswar/boost_1_55_0 -isystem >> /home1/03023/rajeswar/include/vtk-6.1 -o >> CMakeFiles/demo_poisson.dir/main.cpp.o -c >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/main.cpp >> >> Linking CXX executable demo_poisson >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >> CMakeFiles/demo_poisson.dir/link.txt --verbose=1 >> /usr/bin/c++ -std=c++0x -Wno-deprecated -frounding-math >> -fno-strict-aliasing -fopenmp -O2 -g >> CMakeFiles/demo_poisson.dir/main.cpp.o -o demo_poisson -rdynamic >> /home1/03023/rajeswar/lib/libdolfin.so -lxml2 >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_filesystem.so >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_program_options.so >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_system.so >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_thread.so >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_iostreams.so >> /home1/03023/rajeswar/lib/libCGAL.so >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_thread.so >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_system.so >> /home1/03023/rajeswar/lib/libgmp.so /home1/03023/rajeswar/lib/libmpfr.so >> -lz /opt/apps/intel14/mvapich2/2.0b/lib/libmpichcxx.so >> /opt/apps/intel14/mvapich2/2.0b/lib/libmpich.so >> /opt/apps/intel14/mvapich2/2.0b/lib/libopa.so >> /opt/apps/intel14/mvapich2/2.0b/lib/libmpl.so -lQtGui -lQtCore >> /home1/03023/rajeswar/boost_1_55_0/stage/lib/libboost_iostreams.so >> /home1/03023/rajeswar/lib/libCGAL.so /home1/03023/rajeswar/lib/libgmp.so >> /home1/03023/rajeswar/lib/libmpfr.so -lz >> /opt/apps/intel14/mvapich2/2.0b/lib/libmpichcxx.so >> /opt/apps/intel14/mvapich2/2.0b/lib/libmpich.so >> /opt/apps/intel14/mvapich2/2.0b/lib/libopa.so >> /opt/apps/intel14/mvapich2/2.0b/lib/libmpl.so -lQtGui -lQtCore >> -Wl,-rpath,/home1/03023/rajeswar/lib:/home1/03023/rajeswar/boost_1_55_0/stage/lib:/opt/apps/intel14/mvapich2/2.0b/lib >> >> /usr/bin/ld: warning: libgmp.so.3, needed by >> /home1/03023/rajeswar/lib/libmpfr.so, may conflict with libgmp.so.10 >> /usr/bin/ld: warning: libgmp.so.3, needed by >> /home1/03023/rajeswar/lib/libmpfr.so, may conflict with libgmp.so.10 >> make[2]: Leaving directory >> `/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build' >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_report >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMakeFiles >> 1 >> [100%] Built target demo_poisson >> make[1]: Leaving directory >> `/home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build' >> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_start >> /home1/03023/rajeswar/share/dolfin/demo/documented/poisson/cpp/build/CMake >> >> -------------------------------------------EXECUTION--------------------------------------- >> >> now when i execte i get following error >> >> login3$ ./demo_poisson >> Solving linear variational problem. >> terminate called after throwing an instance of 'std::runtime_error' >> what(): >> >> *** >> ------------------------------------------------------------------------- >> *** DOLFIN encountered an error. If you are not able to resolve this issue >> *** using the information listed below, you can ask for help at >> *** >> *** fen...@fenicsproject.org >> *** >> *** Remember to include the error message listed below and, if possible, >> *** include a *minimal* running example to reproduce the error. >> *** >> *** >> ------------------------------------------------------------------------- >> *** Error: Unable to factorize matrix with UMFPACK LU solver (symbolic). >> *** Reason: UMFPACK has not been installed. >> *** Where: This error was encountered inside UmfpackLUSolver.cpp. >> *** Process: unknown >> *** >> *** DOLFIN version: 1.4.0 >> *** Git changeset: >> *** >> ------------------------------------------------------------------------- >> >> [login3.stampede.tacc.utexas.edu:mpi_rank_0][error_sighandler] Caught >> error: Aborted (signal 6) >> >> ------------------------------------------------------------------------------------------- >> >> >> for python iam stuck at same place >> >> >> thanks.... >> >> *with regards..* >> >> *M. Sai Rajeswar* >> *M-tech Computer Technology* >> >> >> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >> >> >> On Fri, Jun 27, 2014 at 5:39 PM, Johannes Ring <joha...@simula.no> wrote: >> >>> Yes, they look okay. What I don't understand is that the flag -std=c++0x >>> is defined in DOLFIN_CXX_FLAGS in DOLFINConfig.cmake and DOLFIN_CXX_FLAGS >>> is added to CMAKE_CXX_FLAGS in the CMakeLists.txt for the demo, but still >>> the flag is not added when compiling the demo. Just to be sure, can you run >>> the following commands in the C++ poisson demo directory? >>> >>> rm -rf build >>> mkdir build >>> cd build >>> cmake .. >>> make VERBOSE=1 >>> >>> Then post the output from the make command here. >>> >>> Johannes >>> >>> >>> >>> On Tue, Jun 24, 2014 at 4:32 PM, Sai Rajeshwar <rajsa...@gmail.com> >>> wrote: >>> >>>> are they fine.. should i reinstall dolfin . >>>> >>>> thanks.. >>>> >>>> *with regards..* >>>> >>>> *M. Sai Rajeswar* >>>> *M-tech Computer Technology* >>>> >>>> >>>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >>>> >>>> >>>> On Tue, Jun 24, 2014 at 6:24 PM, Sai Rajeshwar <rajsa...@gmail.com> >>>> wrote: >>>> >>>>> >>>>> CMakeCache.txt >>>>> <https://docs.google.com/file/d/0B02fGs-cS7CeMWhucGQ1Q3lJZlk/edit?usp=drive_web> >>>>> >>>>> DOLFINConfig.cmake >>>>> <https://docs.google.com/file/d/0B02fGs-cS7CeNXZHQ3RoMGNPRm8/edit?usp=drive_web> >>>>> >>>>> >>>>> *with regards..* >>>>> >>>>> *M. Sai Rajeswar* >>>>> *M-tech Computer Technology* >>>>> >>>>> >>>>> *IIT Delhi----------------------------------Cogito Ergo Sum---------* >>>>> >>>>> >>>>> On Tue, Jun 24, 2014 at 6:01 PM, Johannes Ring <joha...@simula.no> >>>>> wrote: >>>>> >>>>>> On Tue, Jun 24, 2014 at 1:11 PM, Sai Rajeshwar <rajsa...@gmail.com> >>>>>> wrote: >>>>>> > >>>>>> > login2$ make >>>>>> > [100%] Building CXX object CMakeFiles/demo_poisson.dir/main.cpp.o >>>>>> > In file included from >>>>>> > >>>>>> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/type_traits:35, >>>>>> > from /home1/03023 >>>>>> /rajeswar/include/dolfin/common/MPI.h:30, >>>>>> > from >>>>>> > /home1/03023/rajeswar/include/dolfin/common/dolfin_common.h:17, >>>>>> > from /home1/03023/rajeswar/include/dolfin.h:10, >>>>>> > from >>>>>> > /home1/03023 >>>>>> /rajeswar/share/dolfin/demo/documented/poisson/cpp/main.cpp:34: >>>>>> > >>>>>> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/c++0x_warning.h:31:2: >>>>>> > error: #error This file requires compiler and library support for >>>>>> the >>>>>> > upcoming ISO C++ standard, C++0x. This support is currently >>>>>> experimental, >>>>>> > and must be enabled with the -std=c++0x or -std=gnu++0x compiler >>>>>> options. >>>>>> >>>>>> This is the same problem you had with the Python demo, that is, it >>>>>> does not include the -std=c++0x flag. Can you attach the >>>>>> CMakeCache.txt file in the demo build directory. Please also attach >>>>>> DOLFINConfig.cmake (which should be installed in ~/share/dolfin/cmake/ >>>>>> in your case). >>>>>> >>>>>> Johannes >>>>>> >>>>> >>>>> >>>> >>> >> >
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