You can also disable plotting by setting export DOLFIN_NOPLOT=1
Or you can remove the line with the plot command from the demo (main.cpp) and recompile the demo. Johannes On Jul 1, 2014 8:31 PM, "Sai Rajeshwar" <[email protected]> wrote: > thanks.. at last reached following error.. what could have gone wrong > now at last moment.. > > ---------------------------------------------------------- > > login3$ ./demo_poisson > Solving linear variational problem. > ERROR: In > /home1/03023/rajeswar/VTK-6.1.0/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx, > line 322 > vtkXOpenGLRenderWindow (0x1024870): bad X server connection. > DISPLAY=[login3.stampede.tacc.utexas.edu:mpi_rank_0][error_sighandler] > Caught error: Aborted (signal 6) > Aborted (core dumped) > ------------------------------ > > *with regards..* > > *M. Sai Rajeswar* > *M-tech Computer Technology* > > > *IIT Delhi----------------------------------Cogito Ergo Sum--------- * > > > On Tue, Jul 1, 2014 at 10:27 PM, Sai Rajeshwar <[email protected]> wrote: > >> suitsparse compiler flags by default has -fPIC flags in >> SuitsparseConfig.mk file.. >> >> so should i rebuild >> >> *with regards..* >> >> *M. Sai Rajeswar* >> *M-tech Computer Technology* >> >> >> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >> >> >> On Tue, Jul 1, 2014 at 8:49 PM, Johannes Ring <[email protected]> wrote: >> >>> You need to rebuild SuiteSparse with the -fPIC flag. >>> >>> Johannes >>> On Jul 1, 2014 5:06 PM, "Sai Rajeshwar" <[email protected]> wrote: >>> >>>> that really helped.. thanks a lot.. >>>> >>>> now while make install there is a error in using libumfpack.a >>>> >>>> -------------------------------------------------- >>>> >>>> [ 96%] Building CXX object >>>> dolfin/CMakeFiles/dolfin.dir/generation/GeometryToCGALConverter.cpp.o >>>> [ 96%] Building CXX object >>>> dolfin/CMakeFiles/dolfin.dir/generation/CSGPrimitives2D.cpp.o >>>> Linking CXX shared library libdolfin.so >>>> >>>> >>>> >>>> >>>> >>>> */usr/bin/ld: /home1/03023 >>>> <03023>/rajeswar/lib/libumfpack.a(umf_dl_local_search.o): relocation >>>> R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared >>>> object; recompile with -fPIC /home1/03023 >>>> <03023>/rajeswar/lib/libumfpack.a: could not read symbols: Bad >>>> valuecollect2: ld returned 1 exit statusmake[2]: *** >>>> [dolfin/libdolfin.so.1.4.0] Error 1 make[1]: *** >>>> [dolfin/CMakeFiles/dolfin.dir/all] Error 2 make: *** [all] Error 2* >>>> -------------------------------------------------- >>>> >>>> is it missing something.. >>>> >>>> *with regards..* >>>> >>>> *M. Sai Rajeswar* >>>> *M-tech Computer Technology* >>>> >>>> >>>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >>>> >>>> >>>> On Tue, Jul 1, 2014 at 7:23 PM, Johannes Ring <[email protected]> >>>> wrote: >>>> >>>>> Is the library libirc.so (or libirc.a) in >>>>> /opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64? If not, you >>>>> should locate the library and modify the -L path in LDFLAGS. >>>>> >>>>> Johannes >>>>> >>>>> >>>>> On Tue, Jul 1, 2014 at 3:44 PM, Sai Rajeshwar <[email protected]> >>>>> wrote: >>>>> >>>>>> ok i tried the exporting as you mentioned.. then ran cmake.. >>>>>> >>>>>> --------------------------------------------------- >>>>>> >>>>>> login3$ cmake -DCMAKE_INSTALL_PREFIX=/home1/03023/rajeswar/ >>>>>> -DCMAKE_PREFIX_PATH=/home/03023/rajeswar -DDOLFIN_ENABLE_SCOTCH=OFF >>>>>> -DDOLFIN_ENABLE_UMFPACK=ON >>>>>> 0-DGMP_LIBRARIES:FILEPATH=/home1/03023/rajeswar/lib/libgmp.so >>>>>> .. >>>>>> >>>>>> >>>>>> >>>>>> -- The C compiler identification is GNU 4.4.7 >>>>>> -- The CXX compiler identification is GNU 4.4.7 >>>>>> -- Check for working C compiler: /usr/bin/gcc >>>>>> -- Check for working C compiler: /usr/bin/gcc -- broken >>>>>> CMake Error at >>>>>> /opt/apps/cmake/2.8.9/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:52 >>>>>> (MESSAGE): >>>>>> The C compiler "/usr/bin/gcc" is not able to compile a simple test >>>>>> program. >>>>>> >>>>>> It fails with the following output: >>>>>> >>>>>> Change Dir: /home1/03023 >>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp >>>>>> >>>>>> >>>>>> >>>>>> Run Build Command:/usr/bin/gmake "cmTryCompileExec665115447/fast" >>>>>> >>>>>> /usr/bin/gmake -f >>>>>> CMakeFiles/cmTryCompileExec665115447.dir/build.make >>>>>> CMakeFiles/cmTryCompileExec665115447.dir/build >>>>>> >>>>>> gmake[1]: Entering directory >>>>>> `/home1/03023/rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp' >>>>>> >>>>>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_report >>>>>> /home1/03023 >>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp/CMakeFiles >>>>>> 1 >>>>>> >>>>>> Building C object >>>>>> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o >>>>>> >>>>>> /usr/bin/gcc -o >>>>>> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o >>>>>> -c >>>>>> /home1/03023 >>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp/testCCompiler.c >>>>>> >>>>>> >>>>>> Linking C executable cmTryCompileExec665115447 >>>>>> >>>>>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >>>>>> CMakeFiles/cmTryCompileExec665115447.dir/link.txt --verbose=1 >>>>>> >>>>>> /usr/bin/gcc >>>>>> -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>> -lirc >>>>>> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o -o >>>>>> cmTryCompileExec665115447 -rdynamic >>>>>> >>>>>> /usr/bin/ld: cannot find -lirc >>>>>> >>>>>> >>>>>> collect2: ld returned 1 exit status >>>>>> >>>>>> gmake[1]: *** [cmTryCompileExec665115447] Error 1 >>>>>> >>>>>> gmake[1]: Leaving directory >>>>>> `/home1/03023/rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp' >>>>>> >>>>>> gmake: *** [cmTryCompileExec665115447/fast] Error 2 >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> CMake will not be able to correctly generate this project. >>>>>> >>>>>> Call Stack (most recent call first): >>>>>> CMakeLists.txt:9 (project) >>>>>> >>>>>> >>>>>> -- Configuring incomplete, errors occurr >>>>>> >>>>>> *with regards..* >>>>>> >>>>>> *M. Sai Rajeswar* >>>>>> *M-tech Computer Technology* >>>>>> >>>>>> >>>>>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >>>>>> >>>>>> >>>>>> On Tue, Jul 1, 2014 at 7:05 PM, Johannes Ring <[email protected]> >>>>>> wrote: >>>>>> >>>>>>> It looks like you are linking to Intel compiled libraries but are >>>>>>> missing a library: >>>>>>> >>>>>>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >>>>>>> CMakeFiles/cmTryCompileExec1785079256.dir/link.txt --verbose=1 >>>>>>> /usr/bin/c++ -std=c++0x -DUMFPACK_TEST_RUNS -fopenmp >>>>>>> CMakeFiles/cmTryCompileExec1785079256.dir/src.cxx.o -o >>>>>>> cmTryCompileExec1785079256 -rdynamic >>>>>>> -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>> /home1/03023/rajeswar/lib/libumfpack.a >>>>>>> /home1/03023/rajeswar/lib/libamd.a >>>>>>> -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core >>>>>>> /home1/03023/rajeswar/lib/libsuitesparseconfig.a >>>>>>> /home1/03023/rajeswar/lib/libsuitesparseconfig.a -lgfortran >>>>>>> -Wl,-rpath,/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>> /home1/03023/rajeswar/lib/libumfpack.a(umf_di_kernel_init.o): In >>>>>>> function `packsp': >>>>>>> ../Source/umf_kernel_init.c:(.text+0xf8): undefined reference to >>>>>>> `__intel_ssse3_rep_memcpy' >>>>>>> ../Source/umf_kernel_init.c:(.text+0x132): undefined reference to >>>>>>> `__intel_ssse3_rep_memcpy' >>>>>>> ... >>>>>>> >>>>>>> The symbol __intel_ssse3_rep_memcpy is provided by libirc.so. Try >>>>>>> adding it to LDFLAGS: >>>>>>> >>>>>>> export >>>>>>> LDFLAGS="-L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>> -lirc" >>>>>>> >>>>>>> Then run cmake again. >>>>>>> >>>>>>> Johannes >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Tue, Jul 1, 2014 at 12:12 PM, Sai Rajeshwar <[email protected]> >>>>>>> wrote: >>>>>>> >>>>>>>> i made findpath(UMFPACK REQUIRED) in CMakeLists.txt to get >>>>>>>> following log file >>>>>>>> CMakeError.log >>>>>>>> <https://docs.google.com/file/d/0B02fGs-cS7CedE85Wm1qdXhTU0U/edit?usp=drive_web> >>>>>>>> >>>>>>>> >>>>>>>> with findpath(UMFPACK QUIET) the following is the log file >>>>>>>> >>>>>>>> >>>>>>>> CMakeError2.log >>>>>>>> <https://docs.google.com/file/d/0B02fGs-cS7CeUmkxNGpSQTY3MEU/edit?usp=drive_web> >>>>>>>> >>>>>>>> >>>>>>>> thought i will send you both >>>>>>>> >>>>>>>> *with regards..* >>>>>>>> >>>>>>>> *M. Sai Rajeswar* >>>>>>>> *M-tech Computer Technology* >>>>>>>> >>>>>>>> >>>>>>>> *IIT Delhi----------------------------------Cogito Ergo >>>>>>>> Sum--------- * >>>>>>>> >>>>>>>> >>>>>>>> On Tue, Jul 1, 2014 at 3:24 PM, Johannes Ring <[email protected]> >>>>>>>> wrote: >>>>>>>> >>>>>>>>> On Tue, Jul 1, 2014 at 11:40 AM, Sai Rajeshwar <[email protected] >>>>>>>>> > wrote: >>>>>>>>> >>>>>>>>>> i installed Suitsparse in /home1/03023/rajeswar/lib and /home1/ >>>>>>>>>> 03023/rajeswar/include as lib and include directories.. the >>>>>>>>>> package it self is in /home1/03023/rajeswar/Suitsparse from >>>>>>>>>> which i built it.. >>>>>>>>>> >>>>>>>>>> now for dolfin i did the following... >>>>>>>>>> ------------------------------------------ >>>>>>>>>> cmake -DCMAKE_INSTALL_PREFIX=/home1/03023/rajeswar/ >>>>>>>>>> -DCMAKE_PREFIX_PATH=/home/03023/rajeswar >>>>>>>>>> -DDOLFIN_ENABLE_SCOTCH=OFF >>>>>>>>>> -DGMP_LIBRARIES:FILEPATH=/home1/03023/rajeswar/lib/libgmp.so >>>>>>>>>> .. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> still it gave the same result.. umfpack, cholmod tests failed >>>>>>>>>> >>>>>>>>> >>>>>>>>> Please attach CMakeFiles/CMakeError.log from the DOLFIN build >>>>>>>>> directory. >>>>>>>>> >>>>>>>>> Johannes >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >> >
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