ok.. then plotting is disabled.. but then how do i visualise the reults or output..
*with regards..* *M. Sai Rajeswar* *M-tech Computer Technology* *IIT Delhi----------------------------------Cogito Ergo Sum---------* On Wed, Jul 2, 2014 at 11:37 AM, Johannes Ring <[email protected]> wrote: > You can also disable plotting by setting > > export DOLFIN_NOPLOT=1 > > Or you can remove the line with the plot command from the demo (main.cpp) > and recompile the demo. > > Johannes > On Jul 1, 2014 8:31 PM, "Sai Rajeshwar" <[email protected]> wrote: > >> thanks.. at last reached following error.. what could have gone wrong >> now at last moment.. >> >> ---------------------------------------------------------- >> >> login3$ ./demo_poisson >> Solving linear variational problem. >> ERROR: In >> /home1/03023/rajeswar/VTK-6.1.0/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx, >> line 322 >> vtkXOpenGLRenderWindow (0x1024870): bad X server connection. >> DISPLAY=[login3.stampede.tacc.utexas.edu:mpi_rank_0][error_sighandler] >> Caught error: Aborted (signal 6) >> Aborted (core dumped) >> ------------------------------ >> >> *with regards..* >> >> *M. Sai Rajeswar* >> *M-tech Computer Technology* >> >> >> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >> >> >> On Tue, Jul 1, 2014 at 10:27 PM, Sai Rajeshwar <[email protected]> >> wrote: >> >>> suitsparse compiler flags by default has -fPIC flags in >>> SuitsparseConfig.mk file.. >>> >>> so should i rebuild >>> >>> *with regards..* >>> >>> *M. Sai Rajeswar* >>> *M-tech Computer Technology* >>> >>> >>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >>> >>> >>> On Tue, Jul 1, 2014 at 8:49 PM, Johannes Ring <[email protected]> wrote: >>> >>>> You need to rebuild SuiteSparse with the -fPIC flag. >>>> >>>> Johannes >>>> On Jul 1, 2014 5:06 PM, "Sai Rajeshwar" <[email protected]> wrote: >>>> >>>>> that really helped.. thanks a lot.. >>>>> >>>>> now while make install there is a error in using libumfpack.a >>>>> >>>>> -------------------------------------------------- >>>>> >>>>> [ 96%] Building CXX object >>>>> dolfin/CMakeFiles/dolfin.dir/generation/GeometryToCGALConverter.cpp.o >>>>> [ 96%] Building CXX object >>>>> dolfin/CMakeFiles/dolfin.dir/generation/CSGPrimitives2D.cpp.o >>>>> Linking CXX shared library libdolfin.so >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> */usr/bin/ld: /home1/03023 >>>>> <03023>/rajeswar/lib/libumfpack.a(umf_dl_local_search.o): relocation >>>>> R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared >>>>> object; recompile with -fPIC /home1/03023 >>>>> <03023>/rajeswar/lib/libumfpack.a: could not read symbols: Bad >>>>> valuecollect2: ld returned 1 exit statusmake[2]: *** >>>>> [dolfin/libdolfin.so.1.4.0] Error 1 make[1]: *** >>>>> [dolfin/CMakeFiles/dolfin.dir/all] Error 2 make: *** [all] Error 2* >>>>> -------------------------------------------------- >>>>> >>>>> is it missing something.. >>>>> >>>>> *with regards..* >>>>> >>>>> *M. Sai Rajeswar* >>>>> *M-tech Computer Technology* >>>>> >>>>> >>>>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- * >>>>> >>>>> >>>>> On Tue, Jul 1, 2014 at 7:23 PM, Johannes Ring <[email protected]> >>>>> wrote: >>>>> >>>>>> Is the library libirc.so (or libirc.a) in >>>>>> /opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64? If not, >>>>>> you >>>>>> should locate the library and modify the -L path in LDFLAGS. >>>>>> >>>>>> Johannes >>>>>> >>>>>> >>>>>> On Tue, Jul 1, 2014 at 3:44 PM, Sai Rajeshwar <[email protected]> >>>>>> wrote: >>>>>> >>>>>>> ok i tried the exporting as you mentioned.. then ran cmake.. >>>>>>> >>>>>>> --------------------------------------------------- >>>>>>> >>>>>>> login3$ cmake -DCMAKE_INSTALL_PREFIX=/home1/03023/rajeswar/ >>>>>>> -DCMAKE_PREFIX_PATH=/home/03023/rajeswar -DDOLFIN_ENABLE_SCOTCH=OFF >>>>>>> -DDOLFIN_ENABLE_UMFPACK=ON >>>>>>> 0-DGMP_LIBRARIES:FILEPATH=/home1/03023/rajeswar/lib/libgmp.so >>>>>>> .. >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- The C compiler identification is GNU 4.4.7 >>>>>>> -- The CXX compiler identification is GNU 4.4.7 >>>>>>> -- Check for working C compiler: /usr/bin/gcc >>>>>>> -- Check for working C compiler: /usr/bin/gcc -- broken >>>>>>> CMake Error at >>>>>>> /opt/apps/cmake/2.8.9/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:52 >>>>>>> (MESSAGE): >>>>>>> The C compiler "/usr/bin/gcc" is not able to compile a simple test >>>>>>> program. >>>>>>> >>>>>>> It fails with the following output: >>>>>>> >>>>>>> Change Dir: /home1/03023 >>>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp >>>>>>> >>>>>>> >>>>>>> >>>>>>> Run Build Command:/usr/bin/gmake "cmTryCompileExec665115447/fast" >>>>>>> >>>>>>> /usr/bin/gmake -f >>>>>>> CMakeFiles/cmTryCompileExec665115447.dir/build.make >>>>>>> CMakeFiles/cmTryCompileExec665115447.dir/build >>>>>>> >>>>>>> gmake[1]: Entering directory >>>>>>> `/home1/03023 >>>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp' >>>>>>> >>>>>>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_progress_report >>>>>>> /home1/03023 >>>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp/CMakeFiles >>>>>>> 1 >>>>>>> >>>>>>> Building C object >>>>>>> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o >>>>>>> >>>>>>> /usr/bin/gcc -o >>>>>>> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o >>>>>>> -c >>>>>>> /home1/03023 >>>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp/testCCompiler.c >>>>>>> >>>>>>> >>>>>>> Linking C executable cmTryCompileExec665115447 >>>>>>> >>>>>>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >>>>>>> CMakeFiles/cmTryCompileExec665115447.dir/link.txt --verbose=1 >>>>>>> >>>>>>> /usr/bin/gcc >>>>>>> -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>> -lirc >>>>>>> CMakeFiles/cmTryCompileExec665115447.dir/testCCompiler.c.o -o >>>>>>> cmTryCompileExec665115447 -rdynamic >>>>>>> >>>>>>> /usr/bin/ld: cannot find -lirc >>>>>>> >>>>>>> >>>>>>> collect2: ld returned 1 exit status >>>>>>> >>>>>>> gmake[1]: *** [cmTryCompileExec665115447] Error 1 >>>>>>> >>>>>>> gmake[1]: Leaving directory >>>>>>> `/home1/03023 >>>>>>> /rajeswar/mine/dolfin-1.4.0/build/CMakeFiles/CMakeTmp' >>>>>>> >>>>>>> gmake: *** [cmTryCompileExec665115447/fast] Error 2 >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> CMake will not be able to correctly generate this project. >>>>>>> >>>>>>> Call Stack (most recent call first): >>>>>>> CMakeLists.txt:9 (project) >>>>>>> >>>>>>> >>>>>>> -- Configuring incomplete, errors occurr >>>>>>> >>>>>>> *with regards..* >>>>>>> >>>>>>> *M. Sai Rajeswar* >>>>>>> *M-tech Computer Technology* >>>>>>> >>>>>>> >>>>>>> *IIT Delhi----------------------------------Cogito Ergo Sum--------- >>>>>>> * >>>>>>> >>>>>>> >>>>>>> On Tue, Jul 1, 2014 at 7:05 PM, Johannes Ring <[email protected]> >>>>>>> wrote: >>>>>>> >>>>>>>> It looks like you are linking to Intel compiled libraries but are >>>>>>>> missing a library: >>>>>>>> >>>>>>>> /opt/apps/cmake/2.8.9/bin/cmake -E cmake_link_script >>>>>>>> CMakeFiles/cmTryCompileExec1785079256.dir/link.txt --verbose=1 >>>>>>>> /usr/bin/c++ -std=c++0x -DUMFPACK_TEST_RUNS -fopenmp >>>>>>>> CMakeFiles/cmTryCompileExec1785079256.dir/src.cxx.o -o >>>>>>>> cmTryCompileExec1785079256 -rdynamic >>>>>>>> -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>>> /home1/03023/rajeswar/lib/libumfpack.a >>>>>>>> /home1/03023/rajeswar/lib/libamd.a >>>>>>>> -lmkl_intel_lp64 -lmkl_gnu_thread -lmkl_core >>>>>>>> /home1/03023/rajeswar/lib/libsuitesparseconfig.a >>>>>>>> /home1/03023/rajeswar/lib/libsuitesparseconfig.a -lgfortran >>>>>>>> -Wl,-rpath,/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>>> /home1/03023/rajeswar/lib/libumfpack.a(umf_di_kernel_init.o): In >>>>>>>> function `packsp': >>>>>>>> ../Source/umf_kernel_init.c:(.text+0xf8): undefined reference to >>>>>>>> `__intel_ssse3_rep_memcpy' >>>>>>>> ../Source/umf_kernel_init.c:(.text+0x132): undefined reference to >>>>>>>> `__intel_ssse3_rep_memcpy' >>>>>>>> ... >>>>>>>> >>>>>>>> The symbol __intel_ssse3_rep_memcpy is provided by libirc.so. Try >>>>>>>> adding it to LDFLAGS: >>>>>>>> >>>>>>>> export >>>>>>>> LDFLAGS="-L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 >>>>>>>> -lirc" >>>>>>>> >>>>>>>> Then run cmake again. >>>>>>>> >>>>>>>> Johannes >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On Tue, Jul 1, 2014 at 12:12 PM, Sai Rajeshwar <[email protected]> >>>>>>>> wrote: >>>>>>>> >>>>>>>>> i made findpath(UMFPACK REQUIRED) in CMakeLists.txt to get >>>>>>>>> following log file >>>>>>>>> CMakeError.log >>>>>>>>> <https://docs.google.com/file/d/0B02fGs-cS7CedE85Wm1qdXhTU0U/edit?usp=drive_web> >>>>>>>>> >>>>>>>>> >>>>>>>>> with findpath(UMFPACK QUIET) the following is the log file >>>>>>>>> >>>>>>>>> >>>>>>>>> CMakeError2.log >>>>>>>>> <https://docs.google.com/file/d/0B02fGs-cS7CeUmkxNGpSQTY3MEU/edit?usp=drive_web> >>>>>>>>> >>>>>>>>> >>>>>>>>> thought i will send you both >>>>>>>>> >>>>>>>>> *with regards..* >>>>>>>>> >>>>>>>>> *M. Sai Rajeswar* >>>>>>>>> *M-tech Computer Technology* >>>>>>>>> >>>>>>>>> >>>>>>>>> *IIT Delhi----------------------------------Cogito Ergo >>>>>>>>> Sum--------- * >>>>>>>>> >>>>>>>>> >>>>>>>>> On Tue, Jul 1, 2014 at 3:24 PM, Johannes Ring <[email protected]> >>>>>>>>> wrote: >>>>>>>>> >>>>>>>>>> On Tue, Jul 1, 2014 at 11:40 AM, Sai Rajeshwar < >>>>>>>>>> [email protected]> wrote: >>>>>>>>>> >>>>>>>>>>> i installed Suitsparse in /home1/03023/rajeswar/lib and /home1/ >>>>>>>>>>> 03023/rajeswar/include as lib and include directories.. the >>>>>>>>>>> package it self is in /home1/03023/rajeswar/Suitsparse from >>>>>>>>>>> which i built it.. >>>>>>>>>>> >>>>>>>>>>> now for dolfin i did the following... >>>>>>>>>>> ------------------------------------------ >>>>>>>>>>> cmake -DCMAKE_INSTALL_PREFIX=/home1/03023/rajeswar/ >>>>>>>>>>> -DCMAKE_PREFIX_PATH=/home/03023/rajeswar >>>>>>>>>>> -DDOLFIN_ENABLE_SCOTCH=OFF >>>>>>>>>>> -DGMP_LIBRARIES:FILEPATH=/home1/03023/rajeswar/lib/libgmp.so >>>>>>>>>>> .. >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> still it gave the same result.. umfpack, cholmod tests failed >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> Please attach CMakeFiles/CMakeError.log from the DOLFIN build >>>>>>>>>> directory. >>>>>>>>>> >>>>>>>>>> Johannes >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>> >>
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