Re: [FEniCS-support] RuntimeError: In instant.recompile

Thu, 23 Oct 2014 08:18:39 -0700 

Sure! Thanks, Jan. Here is the complete file:


-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found SWIG: /usr/bin/swig2.0 (found version "2.0.11")
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    DEBUG
-- Build files have been written to: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c /usr/bin/cmake -H/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c -B/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles/progress.marks 
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c' make -f CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/build.make CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/depend make[2]: Entering directory `/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c' /usr/bin/cmake -E cmake_progress_report /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles 1 
[ 50%] Swig source
/usr/bin/cmake -E make_directory /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c /usr/bin/swig2.0 -python -module ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c -shadow -modern -modernargs -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone -c++ -fcompact -O -I. -small -outdir /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c -c++ -I/usr/include -I/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/. -I/usr/include/python2.7 -I/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c -o /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.i cd /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/DependInfo.cmake --color= Dependee "/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/DependInfo.cmake" is newer than depender "/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/depend.internal". Dependee "/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/depend.internal". Scanning dependencies of target _ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c make[2]: Leaving directory `/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c' make -f CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/build.make CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/build make[2]: Entering directory `/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c' /usr/bin/cmake -E cmake_progress_report /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/CMakeFiles 2 [100%] Building CXX object CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx.o /usr/bin/c++ -D_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_EXPORTS -O2 -fPIC -I/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/. -I/usr/include/python2.7 -I/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c -o CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx.o -c /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074:0: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h: In member function ‘virtual ufc::dofmap* ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0::create() const’: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:636:75: error: cannot allocate an object of abstract type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0’ return new ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0(); 
^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:415:7: note: because the following virtual functions are pure within ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0’: class ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0: public ufc::dofmap 
       ^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:33:0, from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074: /usr/local/include/ufc.h:265:18: note: virtual void ufc::dofmap::tabulate_coordinates(double*, const double*) const 
     virtual void tabulate_coordinates(double* dof_coordinates,
                  ^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074:0: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h: In member function ‘virtual ufc::dofmap* ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0::create_dofmap(std::size_t) const’: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:814:79: error: cannot allocate an object of abstract type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0’ return new ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0(); 
^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:415:7: note: since type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0’ has pure virtual functions class ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0: public ufc::dofmap 
       ^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h: In member function ‘virtual ufc::cell_integral* ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0::create_default_cell_integral() const’: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:849:92: error: cannot allocate an object of abstract type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise’ return new ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise(); 
^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:645:7: note: because the following virtual functions are pure within ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise’: class ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise: public ufc::cell_integral 
       ^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:33:0, from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074: /usr/local/include/ufc.h:291:39: note: virtual const std::vector<bool>& ufc::integral::enabled_coefficients() const 
     virtual const std::vector<bool> & enabled_coefficients() const = 0;
                                       ^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx: In function ‘PyObject* _wrap_new_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0(PyObject*, PyObject*)’: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3145:137: error: cannot allocate an object of abstract type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0’ result = (ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0 *)new ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0(); 
^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074:0: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:415:7: note: since type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0’ has pure virtual functions class ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_dofmap_0: public ufc::dofmap 
       ^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx: In function ‘PyObject* _wrap_new_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise(PyObject*, PyObject*)’: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3180:171: error: cannot allocate an object of abstract type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise’ result = (ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise *)new ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise(); 
^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074:0: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:645:7: note: since type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise’ has pure virtual functions class ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_cell_integral_0_otherwise: public ufc::cell_integral 
       ^
/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx: In function ‘PyObject* _wrap_new_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0(PyObject*, PyObject*)’: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3217:133: error: cannot allocate an object of abstract type ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0’ result = (ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0 *)new ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0(); 
^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074:0: /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:710:7: note: because the following virtual functions are pure within ‘ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0’: class ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c_form_0: public ufc::form 
       ^
In file included from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.h:33:0, from /tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx:3074: /usr/local/include/ufc.h:435:25: note: virtual std::size_t ufc::form::original_coefficient_position(std::size_t) const virtual std::size_t original_coefficient_position(std::size_t i) const = 0; 
                         ^
/usr/local/include/ufc.h:456:25: note: virtual std::size_t ufc::form::num_custom_domains() const 
     virtual std::size_t num_custom_domains() const = 0;
                         ^
/usr/local/include/ufc.h:471:18: note: virtual bool ufc::form::has_custom_integrals() const 
     virtual bool has_custom_integrals() const = 0;
                  ^
/usr/local/include/ufc.h:494:30: note: virtual ufc::custom_integral* ufc::form::create_custom_integral(std::size_t) const virtual custom_integral* create_custom_integral(std::size_t i) const = 0; 
                              ^
/usr/local/include/ufc.h:511:30: note: virtual ufc::custom_integral* ufc::form::create_default_custom_integral() const 
     virtual custom_integral* create_default_custom_integral() const = 0;
                              ^
make[2]: *** [CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx.o] Error 1 make[2]: Leaving directory `/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c' make[1]: *** [CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/all] Error 2 make[1]: Leaving directory `/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c' 
make: *** [all] Error 2


On 10/23/2014 05:42 AM, Jan Blechta wrote:

On Thu, 23 Oct 2014 01:41:30 -0500
Ben Crestel <[email protected]> wrote:


I installed Fenics on Ubuntu 14.04 via the command line (sudo apt-get
install fenics) w/o adding a specific ppa before (this gives me
dolfin version 1.3.0).

Next I open ipython then type:

from dolfin import *
mesh = UnitSquareMesh(10,10)
V = FunctionSpace(mesh, 'Lagrange', 1)

And I get the following error message:
Calling FFC just-in-time (JIT) compiler, this may take some time.
In instant.recompile: The module did not compile with command 'make
VERBOSE=1', see
'/home/ben/.instant/error/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c/compile.log'

Everything was working fine a couple of weeks ago.  I then tried to
compile Fenics from source. It didn't work completely and I decided
to revert to the initial working state I had. But unsuccessfully....

If you were installing from source
to /usr[/local]/{lib,bin,include,share} (or any other directories in
PATH, LD_LIBRARY_PATH, PYTHONPATH) you may need to clean it up to
prevent clashes with packaged version.

Then follow the instructions here
http://fenicsproject.org/download/ubuntu_details.html#ubuntu-ppa


It's getting really frustrating. I hope someone has an idea on how to
fix that.

Thanks,

Ben



P.S: The file mentioned in the error message is rather long. But here
are the first few lines and the last few lines:

We need first ten twenty lines from first line where 'error' occurs.

Jan


-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found SWIG: /usr/bin/swig2.0 (found version "2.0.11")
-- Configuring done
-- Generating done
CMake Warning:
    Manually-specified variables were not used by the project:

      DEBUG

.......

/usr/local/include/ufc.h:435:25: note:  virtual std::size_t
ufc::form::original_coefficient_position(std::size_t) const
       virtual std::size_t original_coefficient_position(std::size_t
i) const = 0;
                           ^
/usr/local/include/ufc.h:456:25: note:  virtual std::size_t
ufc::form::num_custom_domains() const
       virtual std::size_t num_custom_domains() const = 0;
                           ^
/usr/local/include/ufc.h:471:18: note:  virtual bool
ufc::form::has_custom_integrals() const
       virtual bool has_custom_integrals() const = 0;
                    ^
/usr/local/include/ufc.h:494:30: note:  virtual ufc::custom_integral*
ufc::form::create_custom_integral(std::size_t) const
       virtual custom_integral* create_custom_integral(std::size_t i)
const = 0;
                                ^
/usr/local/include/ufc.h:511:30: note:  virtual ufc::custom_integral*
ufc::form::create_default_custom_integral() const
       virtual custom_integral* create_default_custom_integral() const
= 0; ^
make[2]: ***
[CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593cPYTHON_wrap.cxx.o]
Error 1
make[2]: Leaving directory
`/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c'
make[1]: ***
[CMakeFiles/_ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c.dir/all]
Error 2
make[1]: Leaving directory
`/tmp/tmpgD2U432014-10-23-01-28_instant_42ab166e7e6f10680af12bbaf5e4acce93ae0c93/ffc_form_fca4b6ffb2fc6e2e2de21f0bd1c9de03ea2f593c'
make: *** [all] Error 2

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