[Please, keep [email protected] in CC.] On Tue, 20 Jan 2015 18:10:36 -0500 Adrian Butscher <[email protected]> wrote:
> Hi, > > My apologies: > > FEniCS = Stable release 1.5.0, the one that is immediately accessible > on the downloads page, i.e. without going to “older releases.” > > Before giving the contents of the log file, let me mention that a > fellow FEniCS user has told me that the older release 1.4 does not > have the problem I’ve described. So I installed the older version > and tried out the demos — they work fine! Yes, it really looks like a bug in a binary package. See below. Thanks for reporting it! > > The contents of the 1.5.0 log file are here: > > -------------------- > > -- The C compiler identification is Clang 6.0.0 > -- The CXX compiler identification is Clang 6.0.0 > -- Check for working C compiler: /usr/bin/gcc > -- Check for working C compiler: /usr/bin/gcc -- works > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Check for working CXX compiler: /usr/bin/g++ > -- Check for working CXX compiler: /usr/bin/g++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Found SWIG: /Applications/FEniCS.app/Contents/Resources/bin/swig > (found version "2.0.8") -- Configuring done > -- Generating done > CMake Warning: > Manually-specified variables were not used by the project: > > DEBUG > > > -- Build files have been written > to: > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > /Applications/FEniCS.app/Contents/Resources/bin/cmake > -H/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > -B/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > --check-build-system CMakeFiles/Makefile.cmake > 0 /Applications/FEniCS.app/Contents/Resources/bin/cmake -E > cmake_progress_start > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles/progress.marks > /Applications/Xcode.app/Contents/Developer/usr/bin/make > -f CMakeFiles/Makefile2 > all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f > CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/build.make > CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/depend > /Applications/FEniCS.app/Contents/Resources/bin/cmake > -E > cmake_progress_report > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles > 1 [ 50%] Swig > source /Applications/FEniCS.app/Contents/Resources/bin/cmake -E > make_directory > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > /Applications/FEniCS.app/Contents/Resources/bin/swig > -python -module > dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 -shadow > -modern -modernargs -fastdispatch -fvirtual -nosafecstrings > -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone > -DDOLFIN_VERSION="1.5.0" -DBOOST_UBLAS_NDEBUG -DDOLFIN_SIZE_T=8 > -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_HDF5 -DHAS_TRILINOS -DHAS_SLEPC > -DHAS_PETSC -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_ZLIB > -DHAS_MPI -DHAS_VTK -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MINOR=6 > -DNUMPY_VERSION_MICRO=2 -c++ -fcompact -O -I. -small > -outdir > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > -c++ -I/Applications/FEniCS.app/Contents/Resources/include > -I/usr/include/libxml2 > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse > -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse > -I/Applications/FEniCS.app/Contents/Resources/include -I/usr/include > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources/include/eigen3 > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources/lib/cmake/Trilinos/../../../include/trilinos > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources/include/trilinos > -I/Applications/FEniCS.app/Contents/Resources/include/suitesparse > -I/Applications/FEniCS.app/Contents/Resources/include > -I/Applications/FEniCS.app/Contents/Resources/include/vtk-5.10 > -I/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/. > -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include > -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 > -I/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > -o > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990PYTHON_wrap.cxx > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i > > /Applications/FEniCS.app/Contents/Resources/include/dolfin/la/LinearAlgebraObject.h:36: > Warning 520: Derived class 'LinearAlgebraObject' of > 'dolfin::Variable' is not similarly marked as a smart > pointer. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:63: > Warning 402: Base class 'Hierarchical< Function >' is > incomplete. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/swig/function/pre.i:219: > Warning 402: Only forward declaration 'Hierarchical< Function >' was > found. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:64: > Warning 520: Derived class 'Function' of 'dolfin::GenericFunction' is > not similarly marked as a smart > pointer. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:64: > Warning 520: Derived class 'Function' of 'ufc::function' is not > similarly marked as a smart > pointer. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/function/Function.h:64: > Warning 520: Derived class 'Function' of 'dolfin::Variable' is not > similarly marked as a smart > pointer. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/function/FunctionSpace.h:53: > Warning 402: Base class 'Hierarchical< FunctionSpace >' is > incomplete. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/swig/function/pre.i:218: > Warning 402: Only forward declaration 'Hierarchical< FunctionSpace >' > was > found. > /Applications/FEniCS.app/Contents/Resources/include/dolfin/function/FunctionSpace.h:54: > Warning 520: Derived class 'FunctionSpace' of 'dolfin::Variable' is > not similarly marked as a smart > pointer. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:170: > Warning 315: Nothing known about > 'std::cos'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:171: > Warning 315: Nothing known about > 'std::sin'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:172: > Warning 315: Nothing known about > 'std::tan'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:173: > Warning 315: Nothing known about > 'std::acos'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:174: > Warning 315: Nothing known about > 'std::asin'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:175: > Warning 315: Nothing known about > 'std::atan'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:176: > Warning 315: Nothing known about > 'std::atan2'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:177: > Warning 315: Nothing known about > 'std::cosh'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:178: > Warning 315: Nothing known about > 'std::sinh'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:179: > Warning 315: Nothing known about > 'std::tanh'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:180: > Warning 315: Nothing known about > 'std::exp'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:181: > Warning 315: Nothing known about > 'std::frexp'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:182: > Warning 315: Nothing known about > 'std::ldexp'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:183: > Warning 315: Nothing known about > 'std::log'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:184: > Warning 315: Nothing known about > 'std::log10'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:185: > Warning 315: Nothing known about > 'std::modf'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:186: > Warning 315: Nothing known about > 'std::pow'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:187: > Warning 315: Nothing known about > 'std::sqrt'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:188: > Warning 315: Nothing known about > 'std::ceil'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:189: > Warning 315: Nothing known about > 'std::fabs'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:190: > Warning 315: Nothing known about > 'std::floor'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:191: > Warning 315: Nothing known about > 'std::fmod'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:192: > Warning 315: Nothing known about > 'std::max'. > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.i:193: > Warning 315: Nothing known about 'std::min'. > cd > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > && /Applications/FEniCS.app/Contents/Resources/bin/cmake -E > cmake_depends "Unix > Makefiles" > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/DependInfo.cmake > --color= Dependee > "/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/DependInfo.cmake" > is newer than depender > "/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/depend.internal". > Dependee > "/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles/CMakeDirectoryInformation.cmake" > is newer than depender > "/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/depend.internal". > Scanning dependencies of target > _dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > /Applications/Xcode.app/Contents/Developer/usr/bin/make > -f > CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/build.make > CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/build > /Applications/FEniCS.app/Contents/Resources/bin/cmake > -E > cmake_progress_report > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/CMakeFiles > 2 [100%] Building CXX object > CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990PYTHON_wrap.cxx.o > /usr/bin/g++ > -DBOOST_UBLAS_NDEBUG -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 > -DDOLFIN_VERSION=\"1.5.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI > -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_TRILINOS -DHAS_UMFPACK > -DHAS_VTK -DHAS_ZLIB -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MICRO=2 > -DNUMPY_VERSION_MINOR=6 > -D_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990_EXPORTS > -std=c++11 -Wno-deprecated -O2 -fPIC > -isystem /Applications/FEniCS.app/Contents/Resources/include > -isystem /usr/include/libxml2 > -isystem /Applications/FEniCS.app/Contents/Resources > -isystem /Applications/FEniCS.app/Contents/Resources/include/suitesparse > -isystem /Applications/FEniCS.app/Contents/Resources/include/eigen3 > -isystem > /Applications/FEniCS.app/Contents/Resources/lib/cmake/Trilinos/../../../include/trilinos > -isystem /Applications/FEniCS.app/Contents/Resources/include/trilinos > -isystem /Applications/FEniCS.app/Contents/Resources/include/vtk-5.10 > -I/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/. > -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include > -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 > -I/private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990 > -o > CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990PYTHON_wrap.cxx.o > -c > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990PYTHON_wrap.cxx > > /private/var/folders/67/55yyvb51557frm02pm1ry_8c0000gn/T/tmpJGlVhp2015-1-20-16-26_instant_66528264d07361d64663d27c215c1ab47b1af0a5/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990PYTHON_wrap.cxx:4183:3: > warning: expression result unused; should this cast be to 'void'? > [-Wunused-value] (void *)clientdata; ^ ~ 1 warning generated. > make[2]: *** No rule to make target > `/Users/johannr/fenics-1.5.0/local/lib/libboost_filesystem.dylib', Johannes, it looks like there is a wrong hardcoded path to libboost_filesystem.dylib. Jan > needed by > `_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.so'. > Stop. make[1]: *** > [CMakeFiles/_dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990.dir/all] > Error 2 make: *** [all] Error 2 > > ------------------------------------ > > > On Jan 20, 2015, at 17:39, Jan Blechta <[email protected]> > wrote: > > > On Tue, 20 Jan 2015 17:28:22 -0500 > > Adrian Butscher <[email protected]> wrote: > > > >> Hi, > >> > >> I’m running the lastest FEniCS on my Mac running osx 10.9.5. I > > > > Which one is it? Stable release 1.5.0? > > > >> installed FEniCS using the .dmg provided on the FEniCS website and > >> I’m using the FEniCS shell provided by the FEniCS.app. I.e. I > >> don’t think I’m doing anything outside of the ordinary use-case. > >> I’m having a bug that other users have experienced in the past, > >> and the solutions I’ve found online so far are not clear to me > >> (and seem a bit out of date). My apologies if I am re-asking a > >> question that has already been answered. > >> > >> The problem arises with the demo_poisson.py file though I think it > >> will occur whenever the Expression command is used. (In > >> particular, it does NOT occur when using the demo_cahn-hilliard.py > >> file, as someone else on this forum discovered.) Here’s the > >> output from python: > >> > >> Calling DOLFIN just-in-time (JIT) compiler, this may take some > >> time. In instant.recompile: The module did not compile with > >> command 'make VERBOSE=1', see > >> '/Users/butscher/.instant/error/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/compile.log' > >> Traceback (most recent call last): File > >> "/Applications/FEniCS.app/Contents/Resources/share/dolfin/demo/documented/poisson/python/demo_poisson.py", > >> line 54, in <module> f = Expression("10*exp(-(pow(x[0] - 0.5, 2) + > >> pow(x[1] - 0.5, 2)) / 0.02)") File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/functions/expression.py", > >> line 602, in __new__ mpi_comm=mpi_comm) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/compilemodules/expressions.py", > >> line 217, in compile_expressions mpi_comm=mpi_comm) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/compilemodules/expressions.py", > >> line 145, in compile_expression_code mpi_comm=mpi_comm) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/compilemodules/jit.py", > >> line 64, in mpi_jit return local_jit(*args, **kwargs) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/dolfin/compilemodules/compilemodule.py", > >> line 458, in compile_extension_module **instant_kwargs) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/instant/build.py", > >> line 563, in build_module recompile(modulename, module_path, > >> new_compilation_checksum, build_system) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/instant/build.py", > >> line 165, in recompile instant_error(msg % (cmd, > >> compile_log_filename_dest)) File > >> "/Applications/FEniCS.app/Contents/Resources/lib/python2.7/site-packages/instant/output.py", > >> line 85, in instant_error raise RuntimeError(text) RuntimeError: In > >> instant.recompile: The module did not compile with command 'make > >> VERBOSE=1', see > >> '/Users/butscher/.instant/error/dolfin_compile_code_e71a4e0b9db4c7b3c4379cadd4a0fbc66cf1c990/compile.log’ > > > > Please, post contents of this file otherwise we can barely help you. > > > > Jan > > > >> > >> If someone knows, please advise me on how to fix this problem. > >> Many thanks. > >> > >> Adrian > >> _______________________________________________ > >> fenics-support mailing list > >> [email protected] > >> http://fenicsproject.org/mailman/listinfo/fenics-support > > _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
