I have no idea what is going on. Any ideas?
Sure, you have to look into CMake logs what's going wrong
/afs/hpc2n.umu.se/home/b/bbrydsoe/.hashdist/tmp/vtk-izqbwqpiwzwf/_build/CMakeFiles/CMakeOutput.log
/afs/hpc2n.umu.se/home/b/bbrydsoe/.hashdist/tmp/vtk-izqbwqpiwzwf/_build/CMakeFiles/CMakeError.log
In case of troubles you can post the files (or just relevant content)
here.
BTW, do you need visualization facilities in DOLFIN on cluster
installation at all? You could just remove VTK from hashdist profile.
I looked in CMakeError.log. It looks as if it is not finding the
pthreads library, which is odd.
Anyway, I tried to compile without vtk, and it got a little further now.
It starts building dolfin, actually, but does not complete. This is the
tail of build.sh:
2015/02/05 15:07:00 - INFO: [package:run_job] [ 95%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/refinement/RivaraRefinement.cpp.o
2015/02/05 15:07:03 - INFO: [package:run_job] [ 96%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/refinement/UniformMeshRefinement.cpp.o
2015/02/05 15:07:05 - INFO: [package:run_job] [ 96%] Building CXX object
dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o
2015/02/05 15:07:06 - INFO: [package:run_job] Linking CXX shared library
libdolfin.so
2015/02/05 15:07:13 - INFO: [package:run_job] [ 96%] Built target dolfin
2015/02/05 15:07:13 - INFO: [package:run_job] Scanning dependencies of
target copy_swig_files
2015/02/05 15:07:14 - INFO: [package:run_job] [ 96%] Built target
copy_swig_files
2015/02/05 15:07:14 - INFO: [package:run_job] [ 96%] Swig source
2015/02/05 15:07:31 - INFO: [package:run_job] Scanning dependencies of
target _mesh
2015/02/05 15:07:31 - INFO: [package:run_job] [ 96%] Building CXX object
dolfin/swig/modules/mesh/CMakeFiles/_mesh.dir/modulePYTHON_wrap.cxx.o
2015/02/05 15:07:49 - INFO: [package:run_job] make[2]: *** No rule to make
target
`/afs/hpc2n.umu.se/home/b/bbrydsoe/.hashdist/bld/python/vocgqpztn6ne/lib/libpython2.7.so',
needed by `dolfin/swig/modules/mesh/_mesh.so'. Stop.
2015/02/05 15:07:49 - INFO: [package:run_job] make[1]: ***
[dolfin/swig/modules/mesh/CMakeFiles/_mesh.dir/all] Error 2
2015/02/05 15:07:49 - INFO: [package:run_job] make: *** [all] Error 2
2015/02/05 15:07:49 - ERROR: [package:run_job] Command '[u'/bin/bash',
'_hashdist/build.sh']' returned non-zero exit status 2
2015/02/05 15:07:49 - ERROR: [package:run_job] command failed (code=2);
raising
--
Birgitte Maria E. Brydsö
HPC2N, MIT-Huset
Umeå University
SE-901 87 Umeå
Telephone: +46(0)90-786 64 55
Email: [email protected]
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