On Thu, 5 Feb 2015 15:44:35 +0100 (CET) Birgitte Maria Elisabeth Brydso <[email protected]> wrote:
> >> I have no idea what is going on. Any ideas? > > > > Sure, you have to look into CMake logs what's going wrong > > > /afs/hpc2n.umu.se/home/b/bbrydsoe/.hashdist/tmp/vtk-izqbwqpiwzwf/_build/CMakeFiles/CMakeOutput.log > > /afs/hpc2n.umu.se/home/b/bbrydsoe/.hashdist/tmp/vtk-izqbwqpiwzwf/_build/CMakeFiles/CMakeError.log > > > > In case of troubles you can post the files (or just relevant > > content) here. > > > > BTW, do you need visualization facilities in DOLFIN on cluster > > installation at all? You could just remove VTK from hashdist > > profile. > > > > > > I looked in CMakeError.log. It looks as if it is not finding the > pthreads library, which is odd. > > Anyway, I tried to compile without vtk, and it got a little further You're almost done. PyDOLFIN modules are the very last step of the build. > now. It starts building dolfin, actually, but does not complete. This > is the tail of build.sh: > > 2015/02/05 15:07:00 - INFO: [package:run_job] [ 95%] Building CXX > object dolfin/CMakeFiles/dolfin.dir/refinement/RivaraRefinement.cpp.o > 2015/02/05 15:07:03 - INFO: [package:run_job] [ 96%] Building CXX > object > dolfin/CMakeFiles/dolfin.dir/refinement/UniformMeshRefinement.cpp.o > 2015/02/05 15:07:05 - INFO: [package:run_job] [ 96%] Building CXX > object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o > 2015/02/05 15:07:06 - INFO: [package:run_job] Linking CXX shared > library libdolfin.so 2015/02/05 15:07:13 - INFO: [package:run_job] > [ 96%] Built target dolfin 2015/02/05 15:07:13 - INFO: > [package:run_job] Scanning dependencies of target copy_swig_files > 2015/02/05 15:07:14 - INFO: [package:run_job] [ 96%] Built target > copy_swig_files > 2015/02/05 15:07:14 - INFO: [package:run_job] [ 96%] Swig source > 2015/02/05 15:07:31 - INFO: [package:run_job] Scanning dependencies > of target _mesh > 2015/02/05 15:07:31 - INFO: [package:run_job] [ 96%] Building CXX > object > dolfin/swig/modules/mesh/CMakeFiles/_mesh.dir/modulePYTHON_wrap.cxx.o > 2015/02/05 15:07:49 - INFO: [package:run_job] make[2]: *** No rule to > make target > `/afs/hpc2n.umu.se/home/b/bbrydsoe/.hashdist/bld/python/vocgqpztn6ne/lib/libpython2.7.so', hashdist tries to link DOLFIN against libpython built by hashdist although you instructed it to use system python. Is there libpython on your system? Try maybe $ locate libpython2.7.so Maybe Johannes will know how to debug it. Jan > needed by `dolfin/swig/modules/mesh/_mesh.so'. Stop. 2015/02/05 > 15:07:49 - INFO: [package:run_job] make[1]: *** > [dolfin/swig/modules/mesh/CMakeFiles/_mesh.dir/all] Error 2 > 2015/02/05 15:07:49 - INFO: [package:run_job] make: *** [all] Error 2 > 2015/02/05 15:07:49 - ERROR: [package:run_job] Command > '[u'/bin/bash', '_hashdist/build.sh']' returned non-zero exit status > 2 2015/02/05 15:07:49 - ERROR: [package:run_job] command failed > (code=2); raising > > > > > > _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
