What do you get when you run the following commands:
$ which swig
$ swig -version
Then I get the version installed by fenics:
$ which swig
/pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/bld/profile/hztejro3ksqb/bin/swig
$ swig -version
SWIG Version 2.0.11
Compiled with g++ [x86_64-unknown-linux-gnu]
Configured options: +pcre
Please see http://www.swig.org for reporting bugs and further information
Also try instant-clean as suggested by Jan.
I did. I got the exact same error as before anyway.
Also attaching the new version of my yaml file.
Is there a specific reason that you use revision
1a97d560b12d86d8c36f8e574a1ebb3ea00067b7 of hashstack? This is from
June 2014 and a lot has happened both in hashdist/hashstack and FEniCS
since then.
No, no reason ;) That's what was in the yaml file I grabbed and made changes
to.
I will remove those lines and try rebuilding with a newer version, and see if
that helps.
I have tried to build using the newer version, but I cannot get it to
build. I get an error during the trilinos step. The end of the log:
2015/03/12 12:59:06 - INFO: [package:run_job] [ 92%] Building CXX object
packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/Epetra_NumPyIntSerialDenseVector.cpp.o
2015/03/12 12:59:06 - INFO: [package:run_job] [ 92%] Building CXX object
packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/Epetra_NumPyIntVector.cpp.o
2015/03/12 12:59:06 - INFO: [package:run_job]
/pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/tmp/trilinos-hydtj26pn6gj/packages/PyTrilinos/src/PyTrilinos_Teuchos_Util.cpp:
In function 'bool PyTrilinos::setPythonParameter(Teuchos::ParameterList&,
const string&, PyObject*)':
2015/03/12 12:59:06 - INFO: [package:run_job]
/pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/tmp/trilinos-hydtj26pn6gj/packages/PyTrilinos/src/PyTrilinos_Teuchos_Util.cpp:132:28:
error: 'NPY_ARRAY_DEFAULT' was not declared in this scope
2015/03/12 12:59:06 - INFO: [package:run_job]
/pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/tmp/trilinos-hydtj26pn6gj/packages/PyTrilinos/src/PyTrilinos_Teuchos_Util.cpp:132:48:
error: 'NPY_ARRAY_NOTSWAPPED' was not declared in this scope
2015/03/12 12:59:06 - INFO: [package:run_job] [ 92%] Building CXX object
packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/Epetra_NumPyMultiVector.cpp.o
2015/03/12 12:59:07 - INFO: [package:run_job] make[2]: ***
[packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/PyTrilinos_Teuchos_Util.cpp.o]
Error 1
2015/03/12 12:59:07 - INFO: [package:run_job] make[2]: *** Waiting for
unfinished jobs....
2015/03/12 12:59:08 - INFO: [package:run_job] make[1]: ***
[packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/all] Error 2
2015/03/12 12:59:08 - INFO: [package:run_job] make: *** [all] Error 2
2015/03/12 12:59:08 - ERROR: [package:run_job] Command '[u'/bin/bash',
'_hashdist/build.sh']' returned non-zero exit status 2
2015/03/12 12:59:08 - ERROR: [package:run_job] command failed (code=2);
raising
I don't know why this happens now? Or what to do to fix it?
Thanks, Birgitte
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