On Thu, Mar 12, 2015 at 1:10 PM, Birgitte Maria Elisabeth Brydso <[email protected]> wrote: >>> What do you get when you run the following commands: >>> >>> $ which swig >>> $ swig -version >>> >> >> Then I get the version installed by fenics: >> >> $ which swig >> >> /pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/bld/profile/hztejro3ksqb/bin/swig >> $ swig -version >> >> SWIG Version 2.0.11 >> >> Compiled with g++ [x86_64-unknown-linux-gnu] >> >> Configured options: +pcre >> >> Please see http://www.swig.org for reporting bugs and further information >> >> >> >>> Also try instant-clean as suggested by Jan. >>> >> >> I did. I got the exact same error as before anyway. >> >>>> Also attaching the new version of my yaml file. >>> >>> >>> Is there a specific reason that you use revision >>> 1a97d560b12d86d8c36f8e574a1ebb3ea00067b7 of hashstack? This is from >>> June 2014 and a lot has happened both in hashdist/hashstack and FEniCS >>> since then. >>> >> >> No, no reason ;) That's what was in the yaml file I grabbed and made >> changes to. >> I will remove those lines and try rebuilding with a newer version, and see >> if that helps. >> > > I have tried to build using the newer version, but I cannot get it to build. > I get an error during the trilinos step. The end of the log: > > 2015/03/12 12:59:06 - INFO: [package:run_job] [ 92%] Building CXX object > packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/Epetra_NumPyIntSerialDenseVector.cpp.o > 2015/03/12 12:59:06 - INFO: [package:run_job] [ 92%] Building CXX object > packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/Epetra_NumPyIntVector.cpp.o > 2015/03/12 12:59:06 - INFO: [package:run_job] > /pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/tmp/trilinos-hydtj26pn6gj/packages/PyTrilinos/src/PyTrilinos_Teuchos_Util.cpp: > In function 'bool PyTrilinos::setPythonParameter(Teuchos::ParameterList&, > const string&, PyObject*)': > 2015/03/12 12:59:06 - INFO: [package:run_job] > /pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/tmp/trilinos-hydtj26pn6gj/packages/PyTrilinos/src/PyTrilinos_Teuchos_Util.cpp:132:28: > error: 'NPY_ARRAY_DEFAULT' was not declared in this scope > 2015/03/12 12:59:06 - INFO: [package:run_job] > /pfs/nobackup/home/b/bbrydsoe/fenics_MPIMODULE_build/tmp/trilinos-hydtj26pn6gj/packages/PyTrilinos/src/PyTrilinos_Teuchos_Util.cpp:132:48: > error: 'NPY_ARRAY_NOTSWAPPED' was not declared in this scope > 2015/03/12 12:59:06 - INFO: [package:run_job] [ 92%] Building CXX object > packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/Epetra_NumPyMultiVector.cpp.o > 2015/03/12 12:59:07 - INFO: [package:run_job] make[2]: *** > [packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/PyTrilinos_Teuchos_Util.cpp.o] > Error 1 > 2015/03/12 12:59:07 - INFO: [package:run_job] make[2]: *** Waiting for > unfinished jobs.... > 2015/03/12 12:59:08 - INFO: [package:run_job] make[1]: *** > [packages/PyTrilinos/src/CMakeFiles/pytrilinos.dir/all] Error 2 > 2015/03/12 12:59:08 - INFO: [package:run_job] make: *** [all] Error 2 > 2015/03/12 12:59:08 - ERROR: [package:run_job] Command '[u'/bin/bash', > '_hashdist/build.sh']' returned non-zero exit status 2 > 2015/03/12 12:59:08 - ERROR: [package:run_job] command failed (code=2); > raising > > > > I don't know why this happens now? Or what to do to fix it?
Can you first try without Trilinos? I haven't tried to build Trilinos for a while and it is not important when building FEniCS. Please report an issue for hashstack (https://github.com/hashdist/hashstack/issues) if you need to build with Trilinos. Johannes _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
