Dear Johannes, Thank you for your quick response.
What does it mean? Do I need to ask our administrator to install a new version of gcc or what? Best regards, Xiaoping. ________________________________________ From: [email protected] <[email protected]> on behalf of Johannes Ring <[email protected]> Sent: Wednesday, April 29, 2015 7:43 AM To: Xiaoping Qian Cc: [email protected] Subject: Re: [FEniCS-support] DOLFIN compiling error with fenics-install.sh On Wed, Apr 29, 2015 at 1:17 PM, Xiaoping Qian <[email protected]> wrote: > Greetings, > > > When I ran fenics-install.sh on my university cluster, I got the following > DOLFIN compiling error. Please see the attached build.log. Also attached is > my yaml file. > > > > ******************************** > > 2015/04/29 00:50:35 - INFO: [package:run_job] 0xb1a35c vectorizable_store > > 2015/04/29 00:50:35 - INFO: [package:run_job] > /usr/gcc-4.9.0/source/gcc/tree-vect-stmts.c:5106 > > 2015/04/29 00:50:35 - INFO: [package:run_job] 0xb1e6a2 > vect_analyze_stmt(gimple_statement_base*, bool*, _slp_tree*) > > 2015/04/29 00:50:35 - INFO: [package:run_job] > /usr/gcc-4.9.0/source/gcc/tree-vect-stmts.c:7102 > > 2015/04/29 00:50:35 - INFO: [package:run_job] 0xb2a296 > vect_analyze_loop_operations > > 2015/04/29 00:50:35 - INFO: [package:run_job] > /usr/gcc-4.9.0/source/gcc/tree-vect-loop.c:1505 > > 2015/04/29 00:50:35 - INFO: [package:run_job] 0xb2a296 vect_analyze_loop_2 > > 2015/04/29 00:50:35 - INFO: [package:run_job] > /usr/gcc-4.9.0/source/gcc/tree-vect-loop.c:1765 > > 2015/04/29 00:50:35 - INFO: [package:run_job] 0xb2a296 > vect_analyze_loop(loop*) > > 2015/04/29 00:50:35 - INFO: [package:run_job] > /usr/gcc-4.9.0/source/gcc/tree-vect-loop.c:1863 > > 2015/04/29 00:50:35 - INFO: [package:run_job] 0xb3ca1b vectorize_loops() > > 2015/04/29 00:50:35 - INFO: [package:run_job] > /usr/gcc-4.9.0/source/gcc/tree-vectorizer.c:430 > > 2015/04/29 00:50:35 - INFO: [package:run_job] Please submit a full bug > report, > > 2015/04/29 00:50:35 - INFO: [package:run_job] with preprocessed source if > appropriate. > > 2015/04/29 00:50:35 - INFO: [package:run_job] Please include the complete > backtrace with any bug report. > > 2015/04/29 00:50:35 - INFO: [package:run_job] See > <http://gcc.gnu.org/bugs.html> for instructions. > > 2015/04/29 00:50:35 - INFO: [package:run_job] gmake[2]: *** > [dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o] Error 1 > > 2015/04/29 00:50:35 - INFO: [package:run_job] gmake[1]: *** > [dolfin/CMakeFiles/dolfin.dir/all] Error 2 > > 2015/04/29 00:50:35 - INFO: [package:run_job] gmake: *** [all] Error 2 > > 2015/04/29 00:50:35 - ERROR: [package:run_job] Command '[u'/bin/bash', > '_hashdist/build.sh']' returned non-zero exit status 2 > > 2015/04/29 00:50:35 - ERROR: [package:run_job] command failed (code=2); > raising > > > ********************************************** > > > Any help is greatly appreciated. I see this in the build.log: 2015/04/29 00:50:35 - INFO: [package:run_job] /home/xqian29/.hashdist/tmp/dolfin-kdjcfosiseqp/dolfin/ale/Poisson2D.h:251:15: internal compiler error: in vectorizable_store, at tree-vect-stmts.c:5106 It looks like this bug: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=63563 Johannes _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
