The problem is this: c++: internal compiler error: Killed (program cc1plus)
This is usually caused by a bug in the compiler or that you ran out of memory. If it is the latter case, you can try to build with only one thread to save some memory: export PROCS=1 Then run fenics-install.sh again. Johannes On Wed, Jul 15, 2015 at 3:45 PM nguyen dang <[email protected]> wrote: > Hello, > I could fix that error by installing libXt-devel > sudo yum install libXt-devel > There is a new error with mshr > [mshr] Building mshr/7olinw2dfk5t, follow log with: > [mshr] tail -f > /home/fenics/.hashdist/tmp/mshr-7olinw2dfk5t/_hashdist/build.log > [mshr|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned > non-zero exit status 2 > [mshr|ERROR] command failed (code=2); raising > real 3607.89 > user 2537.20 > sys 382.04 > I attach log file. > Thanks again for your help. > Best regards, > Dang > > > On 7/15/15, Johannes Ring <[email protected]> wrote: > > Ok, this is a different error, so I assume that slepc has been built > > successfully. The problem with vtk is this: > > > > fatal error: X11/StringDefs.h: No such file or directory > > > > This file can be found in the libxt-dev package on Ubuntu, but I'm not > sure > > what system you are on. You can either install this file or build without > > vtk by removing it from local.yaml. In the latter case, you will not be > > able to do any plotting with DOLFIN. > > > > Johannes > > > > > > On Wed, Jul 15, 2015 at 11:23 AM nguyen dang <[email protected]> > > wrote: > > > >> Dear Johannes, > >> Thanks for your quick response. I followed your instructions but I > >> still get error: > >> [vtk] Building vtk/of7hll3bl2ul, follow log with: > >> [vtk] tail -f > >> /home/fenics/.hashdist/tmp/vtk-of7hll3bl2ul-3/_hashdist/build.log > >> [vtk|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned > >> non-zero exit status 2 > >> [vtk|ERROR] command failed (code=2); raising > >> real 1267.00 > >> user 1092.49 > >> sys 147.74 > >> I attach build.log and local.yaml > >> Thanks for your help, > >> Best regards, > >> Dang > >> > >> > >> > >> > >> On 7/15/15, Johannes Ring <[email protected]> wrote: > >> > [Please include fenics-support in Cc] > >> > > >> > The problem is that it links with the system LAPACK and BLAS instead > of > >> > OpenBLAS that HashDist has built. The quick fix will be to build PETSc > >> > without MUMPS. Try this: > >> > > >> > git clone > >> https://bitbucket.org/fenics-project/fenics-developer-tools.git > >> > cd fenics-developer-tools > >> > cp install/profiles/fenics.Linux.yaml local.yaml > >> > editor local.yaml > >> > > >> > Now remove the following two lines from local.yaml: > >> > > >> > download: | > >> > mumps, scalapack, blacs, ml > >> > > >> > Finally, run: > >> > > >> > ./install/fenics-install.sh local.yaml > >> > > >> > Johannes > >> > > >> > On Tue, Jul 14, 2015 at 7:13 PM André Timótheo <[email protected]> > >> > wrote: > >> > > >> >> > >> >> > >> >> Em ter, 14 de jul de 2015 às 09:33, Johannes Ring <[email protected] > > > >> >> escreveu: > >> >> > >> >>> The error in the build.log is this: > >> >>> > >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] ERROR: See > >> >>> "arch-linux2-c-opt/conf/configure.log" file for > >> >>> details > >> >>> > >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] Checking > >> >>> environment... > >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] Checking PETSc > >> >>> installation... > >> >>> 2015/07/13 23:09:48 - INFO: [package:run_job] ERROR: Unable to link > >> with > >> >>> PETSc > >> >>> > >> >>> Please send us > >> >>> > >> > /projects/d800605f-5bec-48c8-8c21-5fa60022fa9a/.hashdist/tmp/slepc-bvy3tmydxkf2-3/arch-linux2-c-opt/conf/configure.log > >> >>> as an attachment. > >> >>> > >> >>> Johannes > >> >>> > >> >>> On Tue, Jul 14, 2015 at 2:26 PM André Timótheo < > [email protected]> > >> >>> wrote: > >> >>> > >> >>>> I am trying to install FEniCS on SageMathCloud via curl -s > >> >>>> http://fenicsproject.org/fenics-install.sh | bash > >> >>>> ( the option [1] stable fenics version ) > >> >>>> > >> >>>> I have some problems with slepc: > >> >>>> [slepc > >> >>>> ] tail -f > >> >>>> > >> > /projects/d800605f-5bec-48c8-8c21-5fa60022fa9a/.hashdist/tmp/slepc-bvy3tmydx > >> >>>> kf2-3/_hashdist/build.log > >> >>>> [slepc|ERROR > >> >>>> ] Command '[u'/bin/bash', '_hashdist/build.sh']' returned non-zero > >> exit > >> >>>> status 1 > >> >>>> [slepc|ERROR] command failed (code=1); raising > >> >>>> > >> >>>> The build.log error file is attached. > >> >>>> > >> >>>> Thank you very much for any kind of *help*. > >> >>>> > >> >>>> André Timótheo > >> >>>> > >> >>> _______________________________________________ > >> >>>> fenics-support mailing list > >> >>>> [email protected] > >> >>>> http://fenicsproject.org/mailman/listinfo/fenics-support > >> >>>> > >> >>> > >> > > >> > >> > >> -- > >> Nguyen Van Dang > >> Hand phone: +34 675 16 95 90 > >> Alameda Mazarredo, 14, 48009 Bilbao, Bizkaia > >> Spain > >> > > > > > -- > Nguyen Van Dang > Hand phone: +34 675 16 95 90 > Alameda Mazarredo, 14, 48009 Bilbao, Bizkaia > Spain >
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